Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03090 ATGGCACTTAACCACAACCCCTCTTACAAGCTTGTACATCAAGCTCTCCCACCCATCAAAACACAGGTTAATACAAGCCATCATCCACCACAACCTCCTTCAGACTTTTCTTTACCCATATTTGCCATTGTTGTGGCCAGCATCATGGCCACTGCTTTCATACTTATTAGCTACTTGACTCTAGTGAGTAAATGCTGCTCAAACTGGCATCAAGTTAACCCATTGAGATGGATTTCCATCCTGACAGCTAGACAGAATGAAGATCCCTTCATAGCATTCTCTCCCAGGGTGTGGATTCGTGGGCTTGATGAATCTGCCATCCAAGAAATCCAAACATTTCAATTCACAAAAGGAGAAGGTGGTGAGGATCAAAGTGTCCATGGCTGCGTGGTTTGTTTGAATGAATTCCAAGAACAAGATATACTAAAAGTTCTCCCTAATTGCAACCATGCCTTTCACTTGGATTGCATTAACATTTGGCTTCAAACCAATGCTAATTGCCCTCTTTGTAGATCAAGCATTTCAGGCATGAAACCTTGTCCAATGGACCATGTCATAGCTCCAAGCTCTTCTCCTCAAGATTCTCAGTTACTTTCTAACATGGGCAGTGATGAAGACTTTGTGGTCATTGAACTGGGGGGAGAACATGAGGGAGCACTGCCTCAGCTGCAGCAAGAAGGAAATGACTCAAGAGAAAGCCTTGCAGAGAGTAGAAGTCATTCCACAAGGAAGATGGAGCAGAAGGTGGCGCAGTTGAAACCATGGAAGTGTTATCATGGTTCCATCATGGGAGATGAGTGTATTGATGTTAGAAAAAAAGATGACAAGTTTTCTATTCAGCCTATTAGAAGATCTTTCTCTATGGATTCTGCAAATAATAGACAAGTTTACTTAGATGTTCAAGCTATCATACAACAGAATAGGCATCAAAATGAGGCTAGTGCCAGTGAAGATTGTAATAGCAAAGGTCGAAGATCATTCTTTCAATTTCGTTAA 996 0.4177 MALNHNPSYKLVHQALPPIKTQVNTSHHPPQPPSDFSLPIFAIVVASIMATAFILISYLTLVSKCCSNWHQVNPLRWISILTARQNEDPFIAFSPRVWIRGLDESAIQEIQTFQFTKGEGGEDQSVHGCVVCLNEFQEQDILKVLPNCNHAFHLDCINIWLQTNANCPLCRSSISGMKPCPMDHVIAPSSSPQDSQLLSNMGSDEDFVVIELGGEHEGALPQLQQEGNDSRESLAESRSHSTRKMEQKVAQLKPWKCYHGSIMGDECIDVRKKDDKFSIQPIRRSFSMDSANNRQVYLDVQAIIQQNRHQNEASASEDCNSKGRRSFFQFR* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03090 331 Pfam Ring finger domain 129 171 IPR001841 -
Rops8g03090 331 SUPERFAMILY RING/U-box 109 176 - -
Rops8g03090 331 MobiDBLite consensus disorder prediction 308 331 - -
Rops8g03090 331 SMART ring_2 129 170 IPR001841 -
Rops8g03090 331 MobiDBLite consensus disorder prediction 231 246 - -
Rops8g03090 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 176 IPR013083 -
Rops8g03090 331 CDD RING-H2_EL5-like 129 171 - -
Rops8g03090 331 MobiDBLite consensus disorder prediction 224 246 - -
Rops8g03090 331 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Rops8g03090 331 PANTHER RING-H2 FINGER PROTEIN ATL16 20 331 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03090 Rops-Chr8 68643672 68644667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03090 29 310 C3H Transcription Factor Family AT1G04360 42.671 1.46e-69 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03090 K19041 - gmx:100809883 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03090 8 68643672 68644667 Rops8g03090 8 68643672 68644667 ECH
Rops8g03090 8 68643672 68644667 Rops6g00099 6 2603580 2605132 PCT
Rops6g01248 6 27599561 27600604 Rops8g03090 8 68643672 68644667 PCT