Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03086 ATGAGTACTACCAACTTGCACCAAGTTCTCAGAAGCCTTTGTTTCAATACTCATTGGAACTATGCCATCTTTTGGAAGCTCAAACATCGTGCTCGAATGATGTTGACATGGGAGGATGCATACTATGACAATCCTGATTATTATGACTCTTCAGAAAATAAGTACTGTCACAAGACCTTGGAACAGATTGGTGGTGGGAAAATTTCACATGACGCTCTAGGGTTGGCTGTGGCAAAGATGTCATATCATGCATATTCATTAGGGGAAGGTATTGTTGGACAGGTAGCTGTTACTGGAAAGCATCGGTGGATCTGTGCAGATAATCAAGCTACAGGTTCTGGCTTGTCTTTCGAGTTTGCTGATGGGTGGCAGTCTCAGTTTTCTGCTGGAATTAGGACAATTGTTGTTGTTGCTGTCGTCCCACTTGGCGTTGTTCAGCTTGGCTCTATAAATAAAGTGATTGAAGATACGGGGGTTGTGACTCGTATAAGAAATCTTTTTTTGTCTACTCAAGATTACTCAATAGGCCATGTTCCTAGTCAAATACAGGGTTGTATGAAGAGTTCTTCGTATCAGCCAGATGTATTGAAGGAAAATTTGTCTTCAGATATCATGCCATCTTGCTTACATGGTACAGAGAAAACCATGAAGAGTGAAACGGCGGATGTTTTAATGCCCCTTCAATGTTCTGGGAGGAACTTTGCACCTCAGTCTGCTTATGAGAAAATGGCTGATGATGTGGCCAAGCATGAAGGGCCTGAATTTTATAGTGATGAAAGTTCCATTTTGCTTCAGTCCATATCCAATATGATTAATGTGGCGCATCGGGAGTTTGAAGATACGAGACCTCTAAATGGAAGGAAGTGTGAAGGGGGCATTAGTGACTGCAAAAATATGAGATTGGAATCAGAAGAAAATGTCTCATCAGTTTTAAACAATTCTGTTATAAATAATGCTAGCTTCAATGATTTAATGCACCCATCAGAAAAAGTCATAGTTGATTCTGCATGCTTTCCCTCAGATTTTCTTGACGCAGTTGGTTGTGAGAGTGATAAGTTGCATTATGTGGATACTAACCAAAAAGGGTTGTTGAATTTTACCGGACCTTCAGATGCTAACTCCCAAAAACATACCAAAAAGTTTCATACTGAACCTTGTGACAAGGATACCTCATGCTTTCAAACTGAGCCTTGTTTCAAGGATACCTCGAACACATTGTTGAACTTCCCTGCTGGCTGTGAGCTTCATGAAGCACTTGGACCAGCTTTTTTGAAAGGGAGTAACTATTTTAATTGGCTGTCACAGGTTAATCAAGATACGAAAACTGTGGATATGCCAGATGAGATTAGCACTAGTCAGTTGACTTCTGCACTGACTTCTAATTCTCATCCGGAACATCTTTTGGAAGCAATGGTTGCCAACATTTGCCACAACAATAATGATATTAATAGTGAATTATCATTTTGTACATCAATGCAATCTGCAATGACTTCTGGAAAAAATCTTGAAGCTTCTATTCACAACATGCATGCTATCAATTCAGAAGGCTATGCAATAGATAAGCCCCCTCTTATCAGAGAGGACAAACACCATTGTTTGAGTTCATCATCTGGGATATGTGGTGTGATGTCCTCTAAAGGTGTTTCTTCTGCATGTCTTAGTTCATATAGTGAACAGTTAGAAAGGTCTTCTGAACCATCTAAGAACAGCAAGAAAAGGGCTAGGCCTGGGGAAAGTTGCAGGCCTCGGCCAAGAGACAGGCAACTGATCCAAGATCGCATTAAGGAGTTGAGAGAGCTGGTGCCTAATGGAGCAAAGTGCAGTATTGATTCACTACTAGAGCGCGCAATAAAGCACATGCTCTTTCTCCAAAGCATAACTAAGCATGCTGACAAGCTAACTAAATTTGCTGATAGTAAATCAAAGTTGCATCACATGGAGACCGACATTCTTGGATCCTCTAATTATGAGCAGGGTTCAAGTTGGGCAATGGAGGTGGGGGGTCATCTGAAGGTTCATTCGATATTAGTGGAGAATCTTAGCAAGAATGGACAGATGCTTGTTGAGATGCTCTGTGAGGAGTGCAGCCATTTTCTTGAAATAGCAGAAGCCATAAGAAGCTTGGGCCTTACAATTTTGAAGGGTGCAACAAAAGCACATGATGAGAAGATATGGTTATGCTTTGTTGTTGAGGGTCAAAACAACAGAAATGTGCACAGATTGGATATCTTGTGGCCGCTTGTTCAGATACTGCAATCCAAGAGCACCGTGTATTCACAATAA 2283 0.41 MSTTNLHQVLRSLCFNTHWNYAIFWKLKHRARMMLTWEDAYYDNPDYYDSSENKYCHKTLEQIGGGKISHDALGLAVAKMSYHAYSLGEGIVGQVAVTGKHRWICADNQATGSGLSFEFADGWQSQFSAGIRTIVVVAVVPLGVVQLGSINKVIEDTGVVTRIRNLFLSTQDYSIGHVPSQIQGCMKSSSYQPDVLKENLSSDIMPSCLHGTEKTMKSETADVLMPLQCSGRNFAPQSAYEKMADDVAKHEGPEFYSDESSILLQSISNMINVAHREFEDTRPLNGRKCEGGISDCKNMRLESEENVSSVLNNSVINNASFNDLMHPSEKVIVDSACFPSDFLDAVGCESDKLHYVDTNQKGLLNFTGPSDANSQKHTKKFHTEPCDKDTSCFQTEPCFKDTSNTLLNFPAGCELHEALGPAFLKGSNYFNWLSQVNQDTKTVDMPDEISTSQLTSALTSNSHPEHLLEAMVANICHNNNDINSELSFCTSMQSAMTSGKNLEASIHNMHAINSEGYAIDKPPLIREDKHHCLSSSSGICGVMSSKGVSSACLSSYSEQLERSSEPSKNSKKRARPGESCRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLERAIKHMLFLQSITKHADKLTKFADSKSKLHHMETDILGSSNYEQGSSWAMEVGGHLKVHSILVENLSKNGQMLVEMLCEECSHFLEIAEAIRSLGLTILKGATKAHDEKIWLCFVVEGQNNRNVHRLDILWPLVQILQSKSTVYSQ* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03086 760 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 6 167 IPR025610 -
Rops8g03086 760 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 587 629 IPR036638 GO:0046983
Rops8g03086 760 MobiDBLite consensus disorder prediction 564 586 - -
Rops8g03086 760 MobiDBLite consensus disorder prediction 559 586 - -
Rops8g03086 760 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 757 IPR043561 GO:0003700|GO:0006355
Rops8g03086 760 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 574 623 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03086 Rops-Chr8 68605797 68612810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03086 7 755 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 40.816 1.76e-160 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03086 - - ccaj:109796613 1204.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03086 8 68605797 68612810 Rops8g03086 8 68605797 68612810 ECH
Rops8g03086 8 68605797 68612810 Rops6g01255 6 27646001 27661154 PCT