Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03084 ATGACTGGTTCTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGAAGGAAGTGCGTGAGAGGTTGTGTTTTTGCACCTTACTTTTGTCATGAACAAGGTGCTACCCATTTTGCAGCCATTCATAAGGTCTTTGGTGCAAGCAATGTCTCAAAGCTCCTTGCCCATCTCCCTGTGAGTGATCGTTGTGAAGCTGCAGTAACTATCTCATATGAAGCTCAAGCTAGACTTCAGGATCCAATTTATGGCTGTGTTGCCCATATTTTTGCACTCCAACAACAGGTGGTCAATTTACAAGCACAGCTAGCTTATCTCAGGGAACAAGCAGCTCAGAGATGTCTCAATGCCTCAGCTACTGAAACCCCTGATGAGAAATACTTTGAAAAACCTAATACTTTCCCCCAGGATATTCAAAGTTGGTTCCAGATGGAAAATTCCAACATCGATCCTCAATTTCTTCCAAACTTGACCACTAATCCCTCGACAACACAATATTATGGGAATACTACTCCCATGGACCCAAACCCTATTGGAAATTATGAAAATTCAGGAACCATGGAAGAGAGCATCTCATTTTCTAGCTTTGAAAGGAGTTGTAACTCCATCATGTCTTGTGACATGCAAAGACAGTGGTCCTTCCATGAAGTGTATAACCTTCAGTAA 660 0.4242 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVAHIFALQQQVVNLQAQLAYLREQAAQRCLNASATETPDEKYFEKPNTFPQDIQSWFQMENSNIDPQFLPNLTTNPSTTQYYGNTTPMDPNPIGNYENSGTMEESISFSSFERSCNSIMSCDMQRQWSFHEVYNLQ* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03084 219 Coils Coil 87 107 - -
Rops8g03084 219 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Rops8g03084 219 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 168 - -
Rops8g03084 219 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03084 Rops-Chr8 68566546 68567309 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03084 7 201 AS2 family AT3G58190 57.500 9.71e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops8g03084 LOB 5.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03084 K13945 K13944 gmx:100816960 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03084 8 68566546 68567309 Rops8g03084 8 68566546 68567309 ECH
Rops8g03084 8 68566546 68567309 Rops6g01260 6 27702446 27703246 PCT