Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03083 ATGGCTTCTTCTGCAAGTGGAAATGGCAGTGGGAGTGGAACTGGCTCTGGTGGTTCTGGCTCTCCTTGTGGGGCATGCAAGTTCCTCAGACGAAAGTGTGCAGCTGATTGCATCTTTGCACCTTACTTCTGCTCTGAACAAGGGCCTGCTAGATTTGCTGCCATTCATAAAGTGTTTGGTGCCAGCAATGTTTCCAAGTTGCTTTTGCATATACCAGCTCATGATCGTTGTGAGGCGGTTGTCACTATTGCTTATGAGGCTCAGGCTCGTATTAGAGACCCTGTTTATGGTTGTGTCTCCCACATTTTTGCCTTACAACAACAGGTGGCTTGTTTGCAGGCACAACTGATGCAAGTGAAGGCTCAGCTGGCTCAGAACATGATGGAGTCAAGGAACATAGAGAATCAGTGGCCAAGGAATGTTAATGTTGGTGGTGGACAACCAATGAATCCATTTTGTCCCACTTACATGAACCCCATATCTCCTCAAAGCTCACTTGACTCAGTTGATCATAGCAGCATCAATGATGGAATGAGCATGCAAGAGGATTTCTCATTACAAGCTTGTTCTAAGAAAAGATTATATAATAACAATAATGACTTGGGTGAGCTGCATGAACTAGCACTCAGAATGATGAGGAACTGA 645 0.4496 MASSASGNGSGSGTGSGGSGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLAQNMMESRNIENQWPRNVNVGGGQPMNPFCPTYMNPISPQSSLDSVDHSSINDGMSMQEDFSLQACSKKRLYNNNNDLGELHELALRMMRN* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03083 214 Coils Coil 102 122 - -
Rops8g03083 214 ProSiteProfiles LOB domain profile. 21 123 IPR004883 -
Rops8g03083 214 MobiDBLite consensus disorder prediction 1 20 - -
Rops8g03083 214 Pfam Lateral organ boundaries (LOB) domain 22 120 IPR004883 -
Rops8g03083 214 PANTHER LOB DOMAIN CONTAINING PROTEIN 18 141 - -
Rops8g03083 214 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03083 Rops-Chr8 68543889 68545253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03083 4 214 AS2 family AT2G42430 52.964 1.44e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops8g03083 LOB 8.4e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03083 K13944 - gmx:100801508 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03083 8 68543889 68545253 Rops8g03083 8 68543889 68545253 ECH
Rops8g03083 8 68543889 68545253 Rops6g01261 6 27716626 27717852 PCT