Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03078 ATGGAAGGAAACTATCTGACCAGGAACACTCACAAAGGGGAAAGCTTTGGATTTGGGGAGCATACATGGGGAACTTCATGGCCTGCAAGAAACTATGCCTGTAGTTTTTGCAAGAGAGAGTTCAAATCTGCTCAAGCTTTGGGTGGACACATGAATGTTCATAGGAGGGATAGGGCAAGATTGAGATCATCTTTATCCTCATGGGTTTCTCATGAGTCTCCTAAACCTAACCCTAACCCAACTACTCATCTTTCACCCTCCTCACCATCATATCTATCTGATGCCCTTTTGAATTGTGCACACCGTTCTCCACTTTATTGCCCTTGTCTTACTTTGTCTTCTTCACTGTCCCCAGCTTCTAACAGTGGAGATAAGAAACCAAGACTTGCTTCTTCCCAGCTTCCTCCTTTGAGACCTGAAAGCAGGGAAATTAAGAACACAAAGAATGCTTTAGGAGGAGTTGAGGAATTGCAGGGTTATCCAATGGGGGATGAAAGCAAGGTTTTCAAGAATAATAATGAGCACAACATCACGTTGGAGTTGGGAATAGGATTGCTTAAACAACCAAAGGAGAAGTTAGATTTGGAGCTTCGATTGGGGCATTGCTAA 609 0.4335 MEGNYLTRNTHKGESFGFGEHTWGTSWPARNYACSFCKREFKSAQALGGHMNVHRRDRARLRSSLSSWVSHESPKPNPNPTTHLSPSSPSYLSDALLNCAHRSPLYCPCLTLSSSLSPASNSGDKKPRLASSQLPPLRPESREIKNTKNALGGVEELQGYPMGDESKVFKNNNEHNITLELGIGLLKQPKEKLDLELRLGHC* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03078 202 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Rops8g03078 202 MobiDBLite consensus disorder prediction 64 87 - -
Rops8g03078 202 Pfam C2H2-type zinc finger 32 56 - -
Rops8g03078 202 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Rops8g03078 202 SMART c2h2final6 32 54 IPR013087 -
Rops8g03078 202 SUPERFAMILY beta-beta-alpha zinc fingers 29 58 IPR036236 -
Rops8g03078 202 MobiDBLite consensus disorder prediction 118 141 - -
Rops8g03078 202 Gene3D Classic Zinc Finger 21 77 - -
Rops8g03078 202 PANTHER OS07G0101800 PROTEIN 18 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03078 Rops-Chr8 68437443 68438051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03078 20 200 C2H2 Transcription Factor Family AT3G23130 40.526 4.87e-26 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops8g03078 zf-C2H2_6 6.5e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03078 - - gmx:102660083 218.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03078 8 68437443 68438051 Rops6g01265 6 27755940 27756539 PCT