Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03075 ATGACGGCTGAGAGATTTTGTGAGAACGAAGAAGACAAGGCTATGTTGGAATCTATATTAGGTACCGAAGCTGTTGCCTTATTTAGTTCAGCGATTACGAATAACGTCTTTTCCGATGTTATTATTCCGCCTGGTCCTGATTTGGGTATCAAACAGCGGTTGTGCCACCTTGTTGAGGGGTCCAAGTGGGACTATGCCATTTTGTGGCAGGTTGCTGGCTTGAAATCTGGTGGCTATGTCTTGAGATGGGGTGATGGGCACTATAAGGATCCCAAAGAGGCTCAAAGGAATGAGCATGAGGAAGAGGAGGATGATGTCAAGAGGCATGTGTTGCGGAAGCTTCATGCTTGCTGTGGTGGATCTGACTCAAAAGAGTCAATTTATGCAGGGTTGGATAGGGTCTCAGATTTGCATATGTTTTACTTGACCTCAATGTATTATGTATTTGGTTTTAATTCCCAGTGTGGCCCTGGCAGTTCTTTTAAGTGTGGTAAATCATTTTGGGCTTCTGATACTGCTAGTTGTTCAAACCAATATGAATCAAGATCATTTCTGGCGAAATTGGCTGGTTTTCAAACAGTTGTTTATGTACCTCTTAAGGCCGGGGTTGTTGAGCTTGGTTCCATGGAAATGATGCTTGAAGAGCAGGGTGTTTTGGATGTGGTCAGAACAACATTTGGGGAATCTAGTTCTGGCCAGGGAAAGGTATTACCTAAGATTTTTGGGCATGAGTTGAGCCTGGGGGATACAAAATCTCAGTCCATAACTATAAGTTTCTCCCCAAAGGTGGAAGATGATTCTGGTTTCACTTCTGACTCTTATGAAGTGCAAGCACTAGGGGCAAACCATGCTAATGGAAATTCTTCCAATGGGTGTATAGGTGACAGCAATGAGGCAAAAATGTTCCCTCAGTTAAATCAAATGATTCCTGGGAATTTTAATCCTCAAGGAAGGGTTTCTTGTATGGATCCGGGTATTGAAGATTTGTCCTCGCCTCATCCAGATGAGCGGAAGCCCAGAAAAAGAGGGAGAAAGCCTGCCAATGGGAGAGAGGAACCACTGAATCATGTTGAAGCAGAGAGGCAAAGAAGGGAGAAACTTAACCAGAGATTTTATGCCTTAAGAGCTGTTGTTCCTAATATATCTAAAATGGACAAGGCATCTCTGCTTGGTGATGCTATCACCCATATCACTGATCTCCAGAGGAAGATTAAGGTTTTGGAAGCTGAAAAAGGCATGATTAACAATAAGGACAAGCAGTTACCCTTGTCGGATATTGATTTTCAGGCTAGACAGGATGATGCAGTTGTGAGAGTGAGCTGTCCCTTGGATATTCACCCAGTTTCTGGAATTGTTAAAATGTTCAAAGAGCATCAAATTGTAGCACAAGAGTCCAGCGTTTCAACAGCACAGGATAAGGTTATTCATACATTCTCCATTAGAACTCAAGGTGGAGAGGCTGCTGCTGTACAATTGAAAGAAAAGCTTGAAGCATCTCTATCCAAAAATTGA 1512 0.4279 MTAERFCENEEDKAMLESILGTEAVALFSSAITNNVFSDVIIPPGPDLGIKQRLCHLVEGSKWDYAILWQVAGLKSGGYVLRWGDGHYKDPKEAQRNEHEEEEDDVKRHVLRKLHACCGGSDSKESIYAGLDRVSDLHMFYLTSMYYVFGFNSQCGPGSSFKCGKSFWASDTASCSNQYESRSFLAKLAGFQTVVYVPLKAGVVELGSMEMMLEEQGVLDVVRTTFGESSSGQGKVLPKIFGHELSLGDTKSQSITISFSPKVEDDSGFTSDSYEVQALGANHANGNSSNGCIGDSNEAKMFPQLNQMIPGNFNPQGRVSCMDPGIEDLSSPHPDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITHITDLQRKIKVLEAEKGMINNKDKQLPLSDIDFQARQDDAVVRVSCPLDIHPVSGIVKMFKEHQIVAQESSVSTAQDKVIHTFSIRTQGGEAAAVQLKEKLEASLSKN* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03075 503 FunFam Transcription factor bHLH13 344 418 - -
Rops8g03075 503 Coils Coil 390 417 - -
Rops8g03075 503 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 351 400 IPR011598 GO:0046983
Rops8g03075 503 PANTHER MYC 46 499 IPR045084 GO:0003700|GO:0006355
Rops8g03075 503 Gene3D - 344 417 IPR036638 GO:0046983
Rops8g03075 503 SMART finulus 357 406 IPR011598 GO:0046983
Rops8g03075 503 Coils Coil 92 112 - -
Rops8g03075 503 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 354 417 IPR036638 GO:0046983
Rops8g03075 503 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 226 IPR025610 -
Rops8g03075 503 MobiDBLite consensus disorder prediction 329 360 - -
Rops8g03075 503 CDD bHLH_AtAIB_like 348 425 - -
Rops8g03075 503 MobiDBLite consensus disorder prediction 311 360 - -
Rops8g03075 503 Pfam Helix-loop-helix DNA-binding domain 355 401 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03075 Rops-Chr8 68200477 68202733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03075 4 502 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 48.016 1.83e-156 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops8g03075 bHLH-MYC_N 1e-41 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03075 - - gmx:100782107 740.725