Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03069 ATGGCGACGGAAGAACCCACTATCGCTGTGGAAGCCATACCTGAGCCACCGGAAGTCGAGGCTGACCAACCGGCGGAGAATGAGCCTGCCAAGACCGCTACCAAGCCCAAAAAGGCTCCCAAGGAGCCCAAACCCAAGAAAGTTGCTGCTCCTAAATCCCGAAACCCTTCTGCTCATCCTCCCTATGAAGAGATGATCAAGGATGCTATCCTTACACTGAAGGAGAAGAGTGGTTCTAGCCAGTATGCTATTGCTAAGTTTATTGAGGAGAAGCATAAGCAGCTTCCTTCGAACTTCAGGAAGCTATTGTTGTACCATTTGAAGAAGCTTGTTGGTTCTGGAAAGATTGTTAAGGTCAAGGGTTCCTTTAAGCTTCCACCTGTCAAGTCTTCTTCTGCTCCCAAGCCTGCTCCGGCGAAGAAGAAGACTGTAGCTGCTAAACCCAAGCCCAAGCCCAAGCCCAAACCAAAGTCCAAAGCGGCTCCCAAGGCTAAGGATACTAAAAAGACAACAAAAACAGCTAAGACAACTAAGTCAGCTCCGGCTAAGGCGCCTGCCAAGGCAAAGCCCGCAGCTAAGCCCAAGCCCGCTGCCAAGACGAAGCCAGCTGCCAAGCCCAAAGCTGCTCCAGCTAAGGCTAAGTCCAAGTCCTCGGTTGCTGCAAAGCCTAAGGCTGCCGCTGTGAAGCCCAAGCCCAAGCCCAAGCCAGCGGCCAAGTCAAAGCCACCTGCCAAGGCTTCTAGAACGTCGACGAGAACATCCCCGGGGAAGAAAGCCCCTGCTCCTAAACCGGTGGCGAAGAAGGCCGCACCGGTGAAGAAAGCTCCTGCGAAAACTGTGAAGGCCAAGAGTGTAAAATCTCCGGCGAAGAAAGCGACCACAAAGAGGGGAAGGAAGTAG 900 0.53 MATEEPTIAVEAIPEPPEVEADQPAENEPAKTATKPKKAPKEPKPKKVAAPKSRNPSAHPPYEEMIKDAILTLKEKSGSSQYAIAKFIEEKHKQLPSNFRKLLLYHLKKLVGSGKIVKVKGSFKLPPVKSSSAPKPAPAKKKTVAAKPKPKPKPKPKSKAAPKAKDTKKTTKTAKTTKSAPAKAPAKAKPAAKPKPAAKTKPAAKPKAAPAKAKSKSSVAAKPKAAAVKPKPKPKPAAKSKPPAKASRTSTRTSPGKKAPAPKPVAKKAAPVKKAPAKTVKAKSVKSPAKKATTKRGRK* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03069 299 PRINTS Histone H5 signature 45 66 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Rops8g03069 299 PRINTS Histone H5 signature 72 89 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Rops8g03069 299 PRINTS Histone H5 signature 151 165 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Rops8g03069 299 PRINTS Histone H5 signature 211 230 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Rops8g03069 299 PRINTS Histone H5 signature 189 206 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Rops8g03069 299 FunFam Histone H1 53 139 - -
Rops8g03069 299 PANTHER HISTONE H1 26 283 - -
Rops8g03069 299 MobiDBLite consensus disorder prediction 284 299 - -
Rops8g03069 299 CDD H15 56 127 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops8g03069 299 MobiDBLite consensus disorder prediction 118 299 - -
Rops8g03069 299 MobiDBLite consensus disorder prediction 142 158 - -
Rops8g03069 299 Pfam linker histone H1 and H5 family 59 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops8g03069 299 SMART h15plus2 56 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops8g03069 299 MobiDBLite consensus disorder prediction 1 63 - -
Rops8g03069 299 Gene3D - 53 140 IPR036388 -
Rops8g03069 299 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 58 127 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops8g03069 299 MobiDBLite consensus disorder prediction 31 49 - -
Rops8g03069 299 MobiDBLite consensus disorder prediction 159 173 - -
Rops8g03069 299 SUPERFAMILY "Winged helix" DNA-binding domain 55 127 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03069 Rops-Chr8 68087990 68089297 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03069 60 127 Single Myb Histone (SMH) Gene Family AT1G72740 33.824 1.12e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03069 K11275 - cit:102626409 144.05