LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops8g03069	ATGGCGACGGAAGAACCCACTATCGCTGTGGAAGCCATACCTGAGCCACCGGAAGTCGAGGCTGACCAACCGGCGGAGAATGAGCCTGCCAAGACCGCTACCAAGCCCAAAAAGGCTCCCAAGGAGCCCAAACCCAAGAAAGTTGCTGCTCCTAAATCCCGAAACCCTTCTGCTCATCCTCCCTATGAAGAGATGATCAAGGATGCTATCCTTACACTGAAGGAGAAGAGTGGTTCTAGCCAGTATGCTATTGCTAAGTTTATTGAGGAGAAGCATAAGCAGCTTCCTTCGAACTTCAGGAAGCTATTGTTGTACCATTTGAAGAAGCTTGTTGGTTCTGGAAAGATTGTTAAGGTCAAGGGTTCCTTTAAGCTTCCACCTGTCAAGTCTTCTTCTGCTCCCAAGCCTGCTCCGGCGAAGAAGAAGACTGTAGCTGCTAAACCCAAGCCCAAGCCCAAGCCCAAACCAAAGTCCAAAGCGGCTCCCAAGGCTAAGGATACTAAAAAGACAACAAAAACAGCTAAGACAACTAAGTCAGCTCCGGCTAAGGCGCCTGCCAAGGCAAAGCCCGCAGCTAAGCCCAAGCCCGCTGCCAAGACGAAGCCAGCTGCCAAGCCCAAAGCTGCTCCAGCTAAGGCTAAGTCCAAGTCCTCGGTTGCTGCAAAGCCTAAGGCTGCCGCTGTGAAGCCCAAGCCCAAGCCCAAGCCAGCGGCCAAGTCAAAGCCACCTGCCAAGGCTTCTAGAACGTCGACGAGAACATCCCCGGGGAAGAAAGCCCCTGCTCCTAAACCGGTGGCGAAGAAGGCCGCACCGGTGAAGAAAGCTCCTGCGAAAACTGTGAAGGCCAAGAGTGTAAAATCTCCGGCGAAGAAAGCGACCACAAAGAGGGGAAGGAAGTAG	900	0.53	MATEEPTIAVEAIPEPPEVEADQPAENEPAKTATKPKKAPKEPKPKKVAAPKSRNPSAHPPYEEMIKDAILTLKEKSGSSQYAIAKFIEEKHKQLPSNFRKLLLYHLKKLVGSGKIVKVKGSFKLPPVKSSSAPKPAPAKKKTVAAKPKPKPKPKPKSKAAPKAKDTKKTTKTAKTTKSAPAKAPAKAKPAAKPKPAAKTKPAAKPKAAPAKAKSKSSVAAKPKAAAVKPKPKPKPAAKSKPPAKASRTSTRTSPGKKAPAPKPVAKKAAPVKKAPAKTVKAKSVKSPAKKATTKRGRK*	300

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops8g03069	299	PRINTS	Histone H5 signature	45	66	IPR005819	GO:0000786\|GO:0003677\|GO:0006334\|GO:0030527
	Rops8g03069	299	PRINTS	Histone H5 signature	72	89	IPR005819	GO:0000786\|GO:0003677\|GO:0006334\|GO:0030527
	Rops8g03069	299	PRINTS	Histone H5 signature	151	165	IPR005819	GO:0000786\|GO:0003677\|GO:0006334\|GO:0030527
	Rops8g03069	299	PRINTS	Histone H5 signature	211	230	IPR005819	GO:0000786\|GO:0003677\|GO:0006334\|GO:0030527
	Rops8g03069	299	PRINTS	Histone H5 signature	189	206	IPR005819	GO:0000786\|GO:0003677\|GO:0006334\|GO:0030527
	Rops8g03069	299	FunFam	Histone H1	53	139	-	-
	Rops8g03069	299	PANTHER	HISTONE H1	26	283	-	-
	Rops8g03069	299	MobiDBLite	consensus disorder prediction	284	299	-	-
	Rops8g03069	299	CDD	H15	56	127	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Rops8g03069	299	MobiDBLite	consensus disorder prediction	118	299	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops8g03069	Rops-Chr8	68087990	68089297	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops8g03069	60	127	Single Myb Histone (SMH) Gene Family	AT1G72740	33.824	1.12e-06	47.4

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops8g03069	K11275		-	cit:102626409	144.05

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