Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03068 ATGGCGGATATTGATGCAGATGTGGCTTCAGGGCAACCTAAGAAGAGAACGTTCAAGAAGTTCAGTTTCAGAGGTGTGGATTTGGATGCGCTATTGGACATGTCTACTGATGAGCTTGTTAAGCTCTTCAATGCACGTCCCCGCAGAAGGTTTCGACGCGGTTTGACGCGCAAGCCTATGGCATTAATCAAGAAGCTGCGTAAGGCGTCTATACCTGGTGAAAAGCCAGAGCCAGTGAGGACTCACCTCCGCAATATGATCATTGTGCCCGAGATGATTGACAGCATTATTGGTGTTTATAATGGGAAGACCTTCAATCAGGTTGAAATAAAACCAGAAATGATCGGCCACTATCTAGCTGAATTCTCAATCTCTTACAAGCCTGTTAAGCACGGAAGGCCCGGTATTGGTGCTACTCACTCCTCGAGGTTCATTCCTCTCAAGTGA 447 0.4676 MADIDADVASGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFNARPRRRFRRGLTRKPMALIKKLRKASIPGEKPEPVRTHLRNMIIVPEMIDSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03068 148 Hamap 30S ribosomal protein S19 [rpsS]. 47 137 IPR002222 GO:0003735|GO:0005840|GO:0006412
Rops8g03068 148 ProSitePatterns Ribosomal protein S19 signature. 101 125 IPR020934 GO:0003723
Rops8g03068 148 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 6 148 IPR002222 GO:0003735|GO:0005840|GO:0006412
Rops8g03068 148 Gene3D 30s Ribosomal Protein S19; Chain A 8 148 IPR023575 GO:0003735|GO:0005840|GO:0006412
Rops8g03068 148 FunFam 40S ribosomal protein S15 8 148 - -
Rops8g03068 148 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 9 148 IPR002222 GO:0003735|GO:0005840|GO:0006412
Rops8g03068 148 Pfam Ribosomal protein S19 49 131 IPR002222 GO:0003735|GO:0005840|GO:0006412
Rops8g03068 148 NCBIfam 30S ribosomal protein S19 18 148 IPR005713 GO:0003735|GO:0006412|GO:0015935
Rops8g03068 148 SUPERFAMILY Ribosomal protein S19 57 132 IPR023575 GO:0003735|GO:0005840|GO:0006412
Rops8g03068 148 PRINTS Ribosomal protein S19 family signature 81 100 IPR002222 GO:0003735|GO:0005840|GO:0006412
Rops8g03068 148 PRINTS Ribosomal protein S19 family signature 113 128 IPR002222 GO:0003735|GO:0005840|GO:0006412
Rops8g03068 148 PRINTS Ribosomal protein S19 family signature 101 113 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03068 Rops-Chr8 68063830 68066643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03068 1 148 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 84.106 1.23e-85 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03068 K02958 - nnu:104612419 267.314