Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03067 ATGCCTGTTTGCACAGATTCTACGTCACCGTCCAAGCCCTTACCCAAGGAATCACATTTCAGAGGCGTACGGAAGCGTCCATGGGGTCGCTTCGCCGCCGAGATCCGCGATCCTTGGAAGAAGACTCGTAAGTGGCTCGGAACCTTTGACACAGCCGAGGAAGCCGCCAGGGCTTACGACAACGCCGCCAGGACCCTCCGTGGACCCAAGGCAAAGACCAACTTCAACTACGTCCCCATTCATCCGCCTCCCGATGCTGGCAACGTGTTCGGGAGGCAGGTGGAGTTTTGGGGCGCTCCGCTTCATTTTTCCGCCGGAGCACCGGTGAGGTCGGAGTATAAGGGTTACAAGTTGGAGAATATTGCCGATGTTGTGGTAAACAAGGAGGAGAAGATAATGAAAGAGAAAAAGCCGTTTTTGTTTGACCTCAACCAGCCGCCGCCGCTTCTTTGA 453 0.5519 MPVCTDSTSPSKPLPKESHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDNAARTLRGPKAKTNFNYVPIHPPPDAGNVFGRQVEFWGAPLHFSAGAPVRSEYKGYKLENIADVVVNKEEKIMKEKKPFLFDLNQPPPLL* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03067 150 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Rops8g03067 150 MobiDBLite consensus disorder prediction 1 21 - -
Rops8g03067 150 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Rops8g03067 150 CDD AP2 18 78 IPR001471 GO:0003700|GO:0006355
Rops8g03067 150 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Rops8g03067 150 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Rops8g03067 150 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Rops8g03067 150 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Rops8g03067 150 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 104 - -
Rops8g03067 150 FunFam Ethylene-responsive transcription factor 2 18 77 - -
Rops8g03067 150 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03067 Rops-Chr8 68041376 68042017 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03067 16 75 AP2-EREBP Transcription Factor Family AT1G50640 88.333 1.66e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops8g03067 AP2 3.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03067 K09286 - mnt:21389211 192.2