Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03065 ATGAAGCTTGGTATCATGAACATGTCAAATCAGGTGGTGAGAGTGAAGAGGGACGCGATTGCAGCATGCATGACTTGCCCACTTTGCAACAAGTTATTCAGGGAAGCCACAACTATATCTGAATGTCTTCACACGTTTTGCAGGAAGTGCATTTATGATAAAATTATGGATGAGGAGTTGGAATGCTGTCCAATATGCAACATTGATTTGGGTTGTGTTCCACTCGAGAAACTAAGGCCAGACCACAGTTTGCAAGATGTAAGGGCCAAAGTTTTCCCCTTAAAGGGAAGAAAGGTGAAGGCACCTGAAGTTGTCACCTCAGTACCATTACCTGCTAGAAGAAAGGAGAGATCTCTTTCATCTTTGGTTGTCAGCACACCAAGGGTATCTGCACAGGCAACCATGACAGGAAGAAGAACAAAACCTACAAGAAAGGCTAGCAGTCTGCGGTCCTCTAGTTTTTCCATTGAAAAGCCCATTAAAAAAGAGGAAGAATTATTGGAAGATCATCCTGAGAGTTCAAGCTCACCTGACACTTCAAATAAGTTTGGTCATAATACTGGACAGAGTTTGTCCCCTTGTGAGGGTAGTCAATCCATACCCAGTAAAGAAAAAGAGAATGGTGCCGAACCTTGGAATGCAAAATTGGATCTTTGGAAACCTTTGAATTGTTTAGTAGAGGTCGCAAGTAGGAGTAAATCTTTCAAGTCTAATGTGCAAGTATCTGATGCTAAACTAGAACACATTCAAGTAAATGAGAGTGACTCTCAAGTGCACAAAACCAAAAATAAGGAAAATAAACGCAAGGCAAAAGTTGAGGATGAAAAGATTAGCCTTTATCCTGTTTCTTCAGATACAGCAAAACCCAGTAAATTGCGCAGAATACGCAGGAAAAAGGAGCCCACTTTTGGAGAATCAGGCATATCACCCCAAGCTGTGCTGGATTCTACCAGCAATAAACATTTGAGGACTGGTCCAATTTGGTTCTCCTTAGTAGCTTCTGAAAACCAGGAAGGAGATGCACCTTTGCCCCAAATTCCTGCAAGTTATGTGAGAATAAAGGATGGAAGTGTACCTGTCTCATTTATCCAAAAATACCTGATGAAGAAACTAGATCTCAACAGTGAAGCAGAGGTTGAGATTAAATGTATGGGACAACCAGTGCTCCCTACACTGCGGCTACATAATTTGGTAGAGTTGTGGCTGGATACAACAGCATCCACATCACAGAGAATTCCAGCAACTATTGGATCCTCAGCAAAGGATTTTGTGATGGTCCTGGCCTATGCTCGGAAGGTTCCACACCCTTGA 1311 0.4226 MKLGIMNMSNQVVRVKRDAIAACMTCPLCNKLFREATTISECLHTFCRKCIYDKIMDEELECCPICNIDLGCVPLEKLRPDHSLQDVRAKVFPLKGRKVKAPEVVTSVPLPARRKERSLSSLVVSTPRVSAQATMTGRRTKPTRKASSLRSSSFSIEKPIKKEEELLEDHPESSSSPDTSNKFGHNTGQSLSPCEGSQSIPSKEKENGAEPWNAKLDLWKPLNCLVEVASRSKSFKSNVQVSDAKLEHIQVNESDSQVHKTKNKENKRKAKVEDEKISLYPVSSDTAKPSKLRRIRRKKEPTFGESGISPQAVLDSTSNKHLRTGPIWFSLVASENQEGDAPLPQIPASYVRIKDGSVPVSFIQKYLMKKLDLNSEAEVEIKCMGQPVLPTLRLHNLVELWLDTTASTSQRIPATIGSSAKDFVMVLAYARKVPHP* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03065 436 ProSiteProfiles Zinc finger RING-type profile. 26 67 IPR001841 -
Rops8g03065 436 CDD RING-HC_PCGF 24 67 - -
Rops8g03065 436 Pfam Zinc finger, C3HC4 type (RING finger) 26 66 - -
Rops8g03065 436 MobiDBLite consensus disorder prediction 156 172 - -
Rops8g03065 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 118 IPR013083 -
Rops8g03065 436 SMART ring_2 26 66 IPR001841 -
Rops8g03065 436 MobiDBLite consensus disorder prediction 116 208 - -
Rops8g03065 436 MobiDBLite consensus disorder prediction 119 155 - -
Rops8g03065 436 MobiDBLite consensus disorder prediction 173 204 - -
Rops8g03065 436 ProSitePatterns Zinc finger RING-type signature. 42 51 IPR017907 -
Rops8g03065 436 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 8 432 IPR044807 GO:0004842
Rops8g03065 436 SUPERFAMILY RING/U-box 21 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03065 Rops-Chr8 68003217 68009482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03065 9 354 C3H Transcription Factor Family AT2G30580 54.467 1.34e-115 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03065 K16277 - gmx:100793731 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03065 8 68003217 68009482 Rops8g03065 8 68003217 68009482 ECH