Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops8g03065 | ATGAAGCTTGGTATCATGAACATGTCAAATCAGGTGGTGAGAGTGAAGAGGGACGCGATTGCAGCATGCATGACTTGCCCACTTTGCAACAAGTTATTCAGGGAAGCCACAACTATATCTGAATGTCTTCACACGTTTTGCAGGAAGTGCATTTATGATAAAATTATGGATGAGGAGTTGGAATGCTGTCCAATATGCAACATTGATTTGGGTTGTGTTCCACTCGAGAAACTAAGGCCAGACCACAGTTTGCAAGATGTAAGGGCCAAAGTTTTCCCCTTAAAGGGAAGAAAGGTGAAGGCACCTGAAGTTGTCACCTCAGTACCATTACCTGCTAGAAGAAAGGAGAGATCTCTTTCATCTTTGGTTGTCAGCACACCAAGGGTATCTGCACAGGCAACCATGACAGGAAGAAGAACAAAACCTACAAGAAAGGCTAGCAGTCTGCGGTCCTCTAGTTTTTCCATTGAAAAGCCCATTAAAAAAGAGGAAGAATTATTGGAAGATCATCCTGAGAGTTCAAGCTCACCTGACACTTCAAATAAGTTTGGTCATAATACTGGACAGAGTTTGTCCCCTTGTGAGGGTAGTCAATCCATACCCAGTAAAGAAAAAGAGAATGGTGCCGAACCTTGGAATGCAAAATTGGATCTTTGGAAACCTTTGAATTGTTTAGTAGAGGTCGCAAGTAGGAGTAAATCTTTCAAGTCTAATGTGCAAGTATCTGATGCTAAACTAGAACACATTCAAGTAAATGAGAGTGACTCTCAAGTGCACAAAACCAAAAATAAGGAAAATAAACGCAAGGCAAAAGTTGAGGATGAAAAGATTAGCCTTTATCCTGTTTCTTCAGATACAGCAAAACCCAGTAAATTGCGCAGAATACGCAGGAAAAAGGAGCCCACTTTTGGAGAATCAGGCATATCACCCCAAGCTGTGCTGGATTCTACCAGCAATAAACATTTGAGGACTGGTCCAATTTGGTTCTCCTTAGTAGCTTCTGAAAACCAGGAAGGAGATGCACCTTTGCCCCAAATTCCTGCAAGTTATGTGAGAATAAAGGATGGAAGTGTACCTGTCTCATTTATCCAAAAATACCTGATGAAGAAACTAGATCTCAACAGTGAAGCAGAGGTTGAGATTAAATGTATGGGACAACCAGTGCTCCCTACACTGCGGCTACATAATTTGGTAGAGTTGTGGCTGGATACAACAGCATCCACATCACAGAGAATTCCAGCAACTATTGGATCCTCAGCAAAGGATTTTGTGATGGTCCTGGCCTATGCTCGGAAGGTTCCACACCCTTGA | 1311 | 0.4226 | MKLGIMNMSNQVVRVKRDAIAACMTCPLCNKLFREATTISECLHTFCRKCIYDKIMDEELECCPICNIDLGCVPLEKLRPDHSLQDVRAKVFPLKGRKVKAPEVVTSVPLPARRKERSLSSLVVSTPRVSAQATMTGRRTKPTRKASSLRSSSFSIEKPIKKEEELLEDHPESSSSPDTSNKFGHNTGQSLSPCEGSQSIPSKEKENGAEPWNAKLDLWKPLNCLVEVASRSKSFKSNVQVSDAKLEHIQVNESDSQVHKTKNKENKRKAKVEDEKISLYPVSSDTAKPSKLRRIRRKKEPTFGESGISPQAVLDSTSNKHLRTGPIWFSLVASENQEGDAPLPQIPASYVRIKDGSVPVSFIQKYLMKKLDLNSEAEVEIKCMGQPVLPTLRLHNLVELWLDTTASTSQRIPATIGSSAKDFVMVLAYARKVPHP* | 437 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops8g03065 | 436 | ProSiteProfiles | Zinc finger RING-type profile. | 26 | 67 | IPR001841 | - | |
Rops8g03065 | 436 | CDD | RING-HC_PCGF | 24 | 67 | - | - | |
Rops8g03065 | 436 | Pfam | Zinc finger, C3HC4 type (RING finger) | 26 | 66 | - | - | |
Rops8g03065 | 436 | MobiDBLite | consensus disorder prediction | 156 | 172 | - | - | |
Rops8g03065 | 436 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 10 | 118 | IPR013083 | - | |
Rops8g03065 | 436 | SMART | ring_2 | 26 | 66 | IPR001841 | - | |
Rops8g03065 | 436 | MobiDBLite | consensus disorder prediction | 116 | 208 | - | - | |
Rops8g03065 | 436 | MobiDBLite | consensus disorder prediction | 119 | 155 | - | - | |
Rops8g03065 | 436 | MobiDBLite | consensus disorder prediction | 173 | 204 | - | - | |
Rops8g03065 | 436 | ProSitePatterns | Zinc finger RING-type signature. | 42 | 51 | IPR017907 | - | |
Rops8g03065 | 436 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE DRIP1 | 8 | 432 | IPR044807 | GO:0004842 | |
Rops8g03065 | 436 | SUPERFAMILY | RING/U-box | 21 | 90 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops8g03065 | Rops-Chr8 | 68003217 | 68009482 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops8g03065 | 9 | 354 | C3H Transcription Factor Family | AT2G30580 | 54.467 | 1.34e-115 | 340 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops8g03065 | K16277 | - | gmx:100793731 | 721.85 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops8g03065 | 8 | 68003217 | 68009482 | Rops8g03065 | 8 | 68003217 | 68009482 | ECH |