Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03058 ATGGAGGTTGGGTTGAAGAAAGAGAAGATGGGGTTTGAGGAAACTGAGCTGAGGCTTGGTTTGCCTGGAAATGGAGCCACAGCCACTGAAGAAGGAGTAAGGAAGAGAGGATTCTGTGAGACTGAAACTGAGACAACCACTGTGGATTTGATGCTGAATCTTTCCTCTAAGGAACCAACTGCTGGGTCAGATCCAAGTGATAAGGCCAAGACTTTGCATAAGGAGAAGAACACCCTTTTGACTCCAGATCCTGCTAAGCCTCCTGCCAAGGCTCAAGTGGTGGGTTGGCCACCTGTCCGGTCCTTCCGGAAGAACATGTTAGCTGTGCAAAAGAGTGTTGGAGAGGAGAGTGAGAAGAATAGCAGTCCCAATGCAAGCTTTGTCAAAGTGAGCATGGATGGAGCACCTTACCTTCGCAAAGTGGATTTGAAGATGTACAAGAGTTACCGAGAGCTTTCTGATTCCTTAGGCAAAATGTTCAGCTCCTTCACCATTGGGAATTATGAATCTCAAGGAATGAAGGATTTCATGAATGAGAGTAAGCTGATGGATCTGTTGAACAGCTCTGATTATGTCCCAACCTATGAAGACGAGGATGGTGACTGGATGCTTGTCGGTGATGTCCCATGGGAAATGTTTGTTGAATCATGCAAGCGTTTGCGTATCATGAAAGGAAAGGAGGCTATTGGTCTTGCACCAAGAGCCATGGAGAAATGCAAGAACAGGAGCTAG 732 0.4658 MEVGLKKEKMGFEETELRLGLPGNGATATEEGVRKRGFCETETETTTVDLMLNLSSKEPTAGSDPSDKAKTLHKEKNTLLTPDPAKPPAKAQVVGWPPVRSFRKNMLAVQKSVGEESEKNSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTIGNYESQGMKDFMNESKLMDLLNSSDYVPTYEDEDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAMEKCKNRS* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03058 243 ProSiteProfiles PB1 domain profile. 125 225 IPR000270 GO:0005515
Rops8g03058 243 Gene3D - 119 237 - -
Rops8g03058 243 SUPERFAMILY CAD & PB1 domains 116 224 - -
Rops8g03058 243 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 230 IPR003311 GO:0005634|GO:0006355
Rops8g03058 243 FunFam Auxin-responsive protein 120 235 - -
Rops8g03058 243 Pfam AUX/IAA family 14 234 IPR033389 -
Rops8g03058 243 MobiDBLite consensus disorder prediction 63 80 - -
Rops8g03058 243 MobiDBLite consensus disorder prediction 54 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03058 Rops-Chr8 67907540 67911632 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03058 115 233 B3 DNA Binding Superfamily AT4G23980 33.613 4.65e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Rops8g03058 AUX_IAA 2.4e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03058 K14484 - gmx:100810013 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03058 8 67907540 67911632 Rops8g03058 8 67907540 67911632 ECH