Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03057 ATGGGGAGCTATGAAACTGAGTTGAATCTCAAGGCCACAGAGTTAACTTTGGGATTGCCCGGCAGTGATAACGAGTCAGAGAAACGTTCATGCAGTGGCTCTGTCGTTAGAAGCAACAAAAGATCTTCTCCGGAAGCTAGTGTTTCCAACTCTTCTGATTCTTCAGCCACAAGTGATCATGACCAAGACAGTGTCCAACCTGCAAAGGTACAAGTAGTGGGATGGCCACCAATTCGATCTTTTAGGAAGAACAGTCTACAACAGAAGAAGGTTGAACATGCCGATGGATCTGGGATGTACGTGAAAGTTAGCATGGCTGGTGCACCTTACTTGAGGAAGATAGATCTCAAGGTTTCCAAGAACTATCTAGAACTTCTCATGGCCTTGGAAAATATGTTCAAGTGCACATTTGGTGAATATTCAGAAAGAGAAGGTTACAATGGATCTGAATATGCCCCTACTTATGAGGACAAGGATGGTGACTGGATGCTGGTTGGAGATGTTCCATGGAACATGTTTTTGTCTTCCTGCAAGAGGTTGAGAATAGTGAAAGGATCAGAAGCAAAAGGGTTGGCTTGTTTATGA 585 0.4376 MGSYETELNLKATELTLGLPGSDNESEKRSCSGSVVRSNKRSSPEASVSNSSDSSATSDHDQDSVQPAKVQVVGWPPIRSFRKNSLQQKKVEHADGSGMYVKVSMAGAPYLRKIDLKVSKNYLELLMALENMFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFLSSCKRLRIVKGSEAKGLACL* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03057 194 SUPERFAMILY CAD & PB1 domains 94 182 - -
Rops8g03057 194 MobiDBLite consensus disorder prediction 19 65 - -
Rops8g03057 194 Gene3D - 92 194 - -
Rops8g03057 194 Pfam AUX/IAA family 25 192 IPR033389 -
Rops8g03057 194 MobiDBLite consensus disorder prediction 13 69 - -
Rops8g03057 194 FunFam Auxin-responsive protein 93 194 - -
Rops8g03057 194 ProSiteProfiles PB1 domain profile. 98 190 IPR000270 GO:0005515
Rops8g03057 194 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 189 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03057 Rops-Chr8 67892482 67893863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03057 101 191 B3 DNA Binding Superfamily AT2G46530 38.462 4.73e-12 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Rops8g03057 AUX_IAA 1.5e-56 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03057 K14484 - gmx:100792134 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03057 8 67892482 67893863 Rops8g03057 8 67892482 67893863 ECH