Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03056 ATGGCCAATAACCCTTCTGAGGCTCCCGCCGCCGACGACTTCCTCGAACAAATCCTCGGCCTCTCCACCTTCGCTTCCGGCGACTCCGCCTTGGCCGGACACGATGTCGGCTTGCCCGGTACGGCTCCGATGATGCTTCAGCTCAACTCCGGTGACGCCAACCCTCACCTCGCCGCCGGCGGTGCCTTTCATGCGCCTGTGTATCAGTTAGGGCTGAGCTTGGACCAAGGTAAAGGAGGGTTCTTAAAGCCCGAGGAACCCTCCGGTAGTGGCAAGCGCTTCCGTGACGACGTCGTTGATGGTAGACCTAAGAATGTTTTTCATGGGCAACCCATGCCTACTACTATCCCTGCTGCTCCACATCCTCCAGCCATGCGTCCTAGGGTGCGGGCTAGAAGAGGACAGGCTACAGATCCACACAGCATAGCTGAACGGTTACGCAGAGAAAGAATAGCAGAAAGAATCAGGGCATTGCAAGAACTGGTTCCAAGTGTCAACAAGACAGATAGAGCTGCCATGTTAGATGAAATTGTGGATTATGTCAAGTTCTTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGTGGAGCAGGTGCAGTGGCACCACTGGTAACTGACATCCCATTATCATCAGTTGAGGAAGAAGGCAGTGGTGAAGGTGCAAGAAACCGACCGGCTTGGGACAAGTGGTCAAATGATGGCACAGAAAGACAGGTAGCTAAGCTTATGGAAGAAAATGTTGGGGCTGCCATGCAATTTCTTCAATCAAAGGCTCTCTGCATCATGCCCATCTCACTGGCTTCAGCAATATACCAGTCACAACCACCAGACAGCTCTAGTATAGTGAAACCTGAAACTAATCCTCCTTCATAG 879 0.5199 MANNPSEAPAADDFLEQILGLSTFASGDSALAGHDVGLPGTAPMMLQLNSGDANPHLAAGGAFHAPVYQLGLSLDQGKGGFLKPEEPSGSGKRFRDDVVDGRPKNVFHGQPMPTTIPAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSGEGARNRPAWDKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPPDSSSIVKPETNPPS* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03056 292 SMART finulus 141 190 IPR011598 GO:0046983
Rops8g03056 292 FunFam Basic helix-loop-helix transcription factor 130 192 - -
Rops8g03056 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 194 IPR036638 GO:0046983
Rops8g03056 292 Pfam Helix-loop-helix DNA-binding domain 140 184 IPR011598 GO:0046983
Rops8g03056 292 Gene3D - 130 192 IPR036638 GO:0046983
Rops8g03056 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 184 IPR011598 GO:0046983
Rops8g03056 292 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 90 271 - -
Rops8g03056 292 MobiDBLite consensus disorder prediction 104 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03056 Rops-Chr8 67877504 67882485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03056 63 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 80.426 8.81e-120 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops8g03056 HLH 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03056 - - gmx:100797789 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03056 8 67877504 67882485 Rops8g03056 8 67877504 67882485 ECH