Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03053 ATGAACACTCACGGTGAAGGAACCCTTGGTTCGCCGAGTTTGCTGTCCCCTTCTCCGTCGCACTCAGCCACCGCTTCCGCCACCTCTTCCATTGGCAAGCGCAAGCGCGATGACCCCGCGACTCCCTTCACTACCGCTTCCTTCGATGGCGCCCTCACTTCCAATGATGACCTCGAGAGCATCTCTGCCCAAGGCACCGACTCCAATGAGGATGACTATGACAATGACAACGACTCCTCCATGCGCACCTTCACAGCCGCCAGGCTCAACAACCCTCCCTCCGCTCCCCGCTACACCAATCTCAAGACCGATAATTCTGCCCTCGAGAATTCCGACGCCGCCAAAGATGCTGCCACCGCAGGCTCCATCCCTGGCATCATAGTTACGGAGGACACAACTAAGATATTTACTGATAATTTACAGACAAGTGGGGCTTACATCGCCAGGGAAGAGAGTCTCAAGAAAGAGGAGGAAGCAGGAAGGCTGAAATTTGTATGCGTTTCAAATGATGGTGTTGATGAGCATATGATTTGGTTGATAGGATTGAAGAATATATTTGCTAGACAACTTCCCAACATGCCCAAGGAGTACATTGTCCGACTTGTTATGGATAGGAGCCATAAGTCGGTAATGGTTATCAGGCGTAATCTCGTTGTTGGAGGCATTACATACCGTCCCTATGTAAGCCAGAAGTTTGGGGAGATAGCCTTTTGTGCGATTACAGCTAATGAGCAAGTGAAGGGATATGGTACCAGACTGATGAATCACTTAAAGCAGCATGCACGTGATGTAGATGGGCTTACACATTTTCTCACATATGCTGACAATAAAGCTGTTGGTTATTTTATCAAACAGGGTTTTACAAAAGAGATTCACTTGGAGAAAGATCAATGGCAAGGTTTTATAAAGGATTATGTTGGAGTAACTCTCATGGAATACAAGATTGATCCAAAGCTCCCTTACACTGATTTGTCAACCATGATCCGTCCTCAAAGGCAGGCTATTGATGAAAAGATCAGAGAACTGTCAAACTGTCACGTTGTTTATGCTGGAATTGATTTTCAGAAGGATGAAGCTGGTATTCCTAAAAAAATTGTTTATGACATCCCTGGTTTGAGAGAGGCTGGATGGACTCCTGATCAGTGGGGTCATTCACAATTCAGAAGTGGTTCTACTGACAATTCTACAAATCAAAAACATTTGACTTCGTTCATGCGTTCACTTCTAAAGTCAATGCACGATCATGCTGATGCTTGGCCTTTCAAGGAACCAGTTGATGCACGGGATGTTCCTGATTATTATAAAATCATCAAAGATCCAATGGATTTGAAGACAATGAGTAAGAGGGTGGAGTCAGAACGATATTATGTCACATTGGAGATGTTTGTTGCGGATGTCAGAAGAATGTTTGCGAATGCATGCACCTATAATTCTCCAGAAACCATTTACTACAAATGTGCTACAAGGCTAAAAGCCCACTTTCAAAGCAAAATGACAGCAGGCCTCCAGTCTGGTTCCAAAATTCAGTAG 1530 0.4497 MNTHGEGTLGSPSLLSPSPSHSATASATSSIGKRKRDDPATPFTTASFDGALTSNDDLESISAQGTDSNEDDYDNDNDSSMRTFTAARLNNPPSAPRYTNLKTDNSALENSDAAKDAATAGSIPGIIVTEDTTKIFTDNLQTSGAYIAREESLKKEEEAGRLKFVCVSNDGVDEHMIWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRRNLVVGGITYRPYVSQKFGEIAFCAITANEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNKAVGYFIKQGFTKEIHLEKDQWQGFIKDYVGVTLMEYKIDPKLPYTDLSTMIRPQRQAIDEKIRELSNCHVVYAGIDFQKDEAGIPKKIVYDIPGLREAGWTPDQWGHSQFRSGSTDNSTNQKHLTSFMRSLLKSMHDHADAWPFKEPVDARDVPDYYKIIKDPMDLKTMSKRVESERYYVTLEMFVADVRRMFANACTYNSPETIYYKCATRLKAHFQSKMTAGLQSGSKIQ* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03053 509 MobiDBLite consensus disorder prediction 46 68 - -
Rops8g03053 509 ProSitePatterns Bromodomain signature. 418 476 IPR018359 -
Rops8g03053 509 ProSiteProfiles Bromodomain profile. 413 484 IPR001487 GO:0005515
Rops8g03053 509 CDD NAT_SF 218 263 - -
Rops8g03053 509 Pfam Bromodomain 406 488 IPR001487 GO:0005515
Rops8g03053 509 PRINTS Bromodomain signature 416 429 IPR001487 GO:0005515
Rops8g03053 509 PRINTS Bromodomain signature 465 484 IPR001487 GO:0005515
Rops8g03053 509 PRINTS Bromodomain signature 430 446 IPR001487 GO:0005515
Rops8g03053 509 PRINTS Bromodomain signature 447 465 IPR001487 GO:0005515
Rops8g03053 509 Gene3D - 381 506 IPR036427 GO:0005515
Rops8g03053 509 Gene3D - 158 322 - -
Rops8g03053 509 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 169 316 IPR000182 GO:0016747
Rops8g03053 509 Pfam Acetyltransferase (GNAT) family 216 287 IPR000182 GO:0016747
Rops8g03053 509 MobiDBLite consensus disorder prediction 1 80 - -
Rops8g03053 509 CDD Bromo_gcn5_like 401 500 - -
Rops8g03053 509 SMART bromo_6 394 503 IPR001487 GO:0005515
Rops8g03053 509 PANTHER GH11602P 102 506 IPR037800 GO:0004402
Rops8g03053 509 MobiDBLite consensus disorder prediction 1 30 - -
Rops8g03053 509 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 172 321 IPR016181 -
Rops8g03053 509 SUPERFAMILY Bromodomain 378 499 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03053 Rops-Chr8 67833994 67850948 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Rops8g03053 Bromodomain 7.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03053 K06062 - gmx:100791610 815.453