Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03052 ATGGAGTGTCTTGGTGGAGGAACACTTCGTTCAAGGAGTTCGCAGTCCCCTTCCCCATCGCACTCAGCCTCCGCTTCCGCCACCTCTTCCATTCGCAAGCGCAGGCTTGAGTCTGAGGACCACGCGCCTCCATTCCCTCCTTCTTCCTTCGACGGCGCCCTCACCTCCAACGACGACCTCGAGAGCATCTCTGCCCGAGGTGCCGATTCCGATTCTGACAATGACTCTGAGGACGCCGTGGTCGACGATGAGGAGGATGATTATGACAACGACAACGACTCCTCGATGCGCACCTTCACTGCCTCAAGGCTCAACAACCCTCCCTCTGCTTCCCGCAACACGAAGCTTAAAACCGATAATTCCACAGTTAAGATAGAGAATTCTGACTGTGCCAAAGACACCGTAACCACCATCCCCGGTGCCGCCACCGCCCCTGGGATTGTTGTGAAGGAGGACGCAACCAAGATATTCACTGATAATTTACAGACGAGTGGGGCTTACAGCGCCAGGGAAGAAAGCCTCAAGAAAGAGGAGGAAGCAGGAAGGCTGAAATTTGTATGCCTTTCGAATGATGGTGTTGATGAGCATATGGTTTGGTTGATAGGATTGAAGAATATATTTGCTAGACAACTTCCCAACATGCCAAAGGAGTACATTGTCCGACTTGTCATGGATAGGAGCCATAAGTCTGTAATGGTAATAAGGCGTAATCACGTTGTCGGAGGCATTACATATCGTCCCTATGTAAGCCAGAAGTTTGGTGAGATAGCCTTTTGTGCAATCACAGCTGATGAGCAAGTAAAAGGATATGGTACCAGATTGATGAATCACTTAAAACAGCATGCACGTGATGTAGATGGGCTGACACATTTTCTCACATATGCTGACAATAATGCTGTTGGGTATTTTATCAAACAGGGATTTACAAAAGAGATTCACTTGGAGAAAGATCGATGGCAAGGTTATATAAAGGATTATGATGGAGGAATTCTCATGGAATGCAAGATTGATCCAAAGCTCCCTTACACTGATTTGTCAACCATGATCCGTCGTCAAAGGCAGGCAATTGATGAAAAGATCAGAGAACTGTCAAACTGTCACATTGTTTATGCTGGAATTGATTTTCAGAAGGATGAAGCTGGTATTCCTAAAAAAATTGTTTATGACATACCTGGTTTGAGAGAGGCTGGATGGACTCCTGATCAGTGGGGTCATTCACGATTCAGAACTTTAAGTGGTTCTGACACTTCTACAAATCAAAAACAATTGACTTCGTTCATGCGTTCACTTCTAAAGTCAATGCACGAACATGCTGATGCTTGGCCGTTCAAGGAACCAGTTGATGCACGGGATGTTCCTGATTATTATGACATCATCAAAGATCCAATGGATTTGAAGACAATGAGTAAGAGGGTGGAGTCAGATCGATATTACGTCACATTTGAGATGTTTGTTGCGGATGTCAGAAGAATGTTTGCTAATGCACGGACCTATAATTCTCCAGAAACCATTTATTACAAATGTGCTACCAGGCTAGAATCCCACTTTCAGAGCAAAGTACAAGCGGGCCTCCAACCTGGTTCAAAAATTCAGTAG 1596 0.4549 MECLGGGTLRSRSSQSPSPSHSASASATSSIRKRRLESEDHAPPFPPSSFDGALTSNDDLESISARGADSDSDNDSEDAVVDDEEDDYDNDNDSSMRTFTASRLNNPPSASRNTKLKTDNSTVKIENSDCAKDTVTTIPGAATAPGIVVKEDATKIFTDNLQTSGAYSAREESLKKEEEAGRLKFVCLSNDGVDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRRNHVVGGITYRPYVSQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDVDGLTHFLTYADNNAVGYFIKQGFTKEIHLEKDRWQGYIKDYDGGILMECKIDPKLPYTDLSTMIRRQRQAIDEKIRELSNCHIVYAGIDFQKDEAGIPKKIVYDIPGLREAGWTPDQWGHSRFRTLSGSDTSTNQKQLTSFMRSLLKSMHEHADAWPFKEPVDARDVPDYYDIIKDPMDLKTMSKRVESDRYYVTFEMFVADVRRMFANARTYNSPETIYYKCATRLESHFQSKVQAGLQPGSKIQ* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03052 531 PRINTS Bromodomain signature 452 468 IPR001487 GO:0005515
Rops8g03052 531 PRINTS Bromodomain signature 487 506 IPR001487 GO:0005515
Rops8g03052 531 PRINTS Bromodomain signature 438 451 IPR001487 GO:0005515
Rops8g03052 531 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 191 342 IPR016181 -
Rops8g03052 531 MobiDBLite consensus disorder prediction 74 91 - -
Rops8g03052 531 ProSitePatterns Bromodomain signature. 440 498 IPR018359 -
Rops8g03052 531 MobiDBLite consensus disorder prediction 8 31 - -
Rops8g03052 531 MobiDBLite consensus disorder prediction 94 120 - -
Rops8g03052 531 PANTHER GH11602P 72 528 IPR037800 GO:0004402
Rops8g03052 531 Gene3D - 408 526 IPR036427 GO:0005515
Rops8g03052 531 Gene3D - 179 343 - -
Rops8g03052 531 MobiDBLite consensus disorder prediction 1 120 - -
Rops8g03052 531 Pfam Bromodomain 428 510 IPR001487 GO:0005515
Rops8g03052 531 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 183 337 IPR000182 GO:0016747
Rops8g03052 531 Pfam Acetyltransferase (GNAT) family 230 308 IPR000182 GO:0016747
Rops8g03052 531 ProSiteProfiles Bromodomain profile. 435 506 IPR001487 GO:0005515
Rops8g03052 531 CDD Bromo_gcn5_like 422 522 - -
Rops8g03052 531 SUPERFAMILY Bromodomain 407 521 IPR036427 GO:0005515
Rops8g03052 531 FunFam Histone acetyltransferase KAT2A 180 344 - -
Rops8g03052 531 CDD NAT_SF 230 284 - -
Rops8g03052 531 SMART bromo_6 416 525 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03052 Rops-Chr8 67808817 67821440 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Rops8g03052 Bromodomain 2.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03052 K06062 - gmx:100791610 897.116