Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03042 ATGCTGTCAAAATCCACCATGTCGAGCAGCCATGGTCTGAAATATGATGACAAGTCATTTCTCATTGTCACTGCCAAATACACCATCAACAATGCCAAAAGAAGGTGGCGTTTGGTTTTTACAGCAATTTATTTTATACGGGCAATGTCCAAAGATGTCATATCCAAAAGAAATCCCCATTACTACACTAAAAAACTCTTCCAAACCCAGTCTTCTAGTTTCAGCAGCACTGTTGATATAATTGAAATCCCAGTTACCCAACATGTGGACAATGGAACCAATCATTATTCTTTGGTTCCTGATGCTGACAAAGCCAGACTTGCTGATATGGTTAAGGACAAAGCCTTGAAAGCCTTCAGTGAGTTTGGAGGTGTTGAAGGTGTTGCAGATGTTCTTGGAACCATTCCAACAAAGGGAATCCTTGGCAATGATGATGACATTGCCAAACGGCGTGAGTTGTTTGGTTCAAACATTTACCAGAGGCCACCACCCAAAGGCTTCCTACACTTTGTACTGGAAGCTTTCAATGATACCACTATCATCATCCTTCTTGTTTGTGCAGGCCTTTCTCTTGGTTTTGGCATAAAGGAACACGGACCAGGGGAAGGGTGGTATGAAGGTGGGAGCATATTTGTAGCTGTCTTTCTGGTGGTGGTAGTTAGTGCACTCAGCAACTTCAGACAGGAAAGACAATTTGACAAATTGTCTAAGATAAGTAACAACATCAAAGTCCAAGTTTTGAGAAATGGAAGGCCTCAACAGGTATCCATCTTTGAGGTTCTTGTGGGAGATATTGTATCCCTCAAGATTGGTGACCAAATTCCAGCTGATGGATTGTTCTTAGATGGCTATTCCTTACAAGTGGATGAATCAAGTATGACAGGTGAGAGCGACCATGTAGAAATTGATCCCGTAAATAGCCCTTTCTTGTTATCTGGTGCAAAGGTGGTGGATGGCTATGCTCAAATGCTTGTGACATCTGTGGGAACCAACACAGCATGGGGTCAAATGATGAGCTCAATATCCAGAGACACCAAGGAAAGAACACCATTACAAGCTCGTCTTGACAAATTAACCTCTTCTATAGGAAAGATTGGCCTTGCAGTAGCATTTCTTGTTCTCCTTGTGTTGTTAATTCGTTATTTCACTGGAAACACACGAGATGAGAATGGGGTTAAGGAGTTCAAGAGGGGCCAAACCGATCTAGATGACACATTCAATGCGGTTGTGCGTATTGTTGCAGCTGCAGTCACTATTGTGGTTGTGGCAATCCCTGAGGGTCTGCCATTGGCTGTCACTCTCACATTAGCTTACTCCATGAAAAGAATGATGGCAGACCAGGCAATGGTGAGGAAACTTTCGGCTTGTGAAACTATGGGGTCAGCAACAGTCATCTGCACAGATAAAACTGGAACCTTAACGTTGAATCAGATGAGAGTGACCAAGTTTTGGCTTGGCCTAGAAAATGTTATTGAAAACTTTTCCAATGCAATGGCCCGAAATGTTCTCGAGTTATTCCACCAGGCAGTTGGCCTCAATACAACTGGCAGTGTCTATAAGCCTTCACCAGGATCTGAACCTGAAATTTCAGGTAGCCCCACAGAGAAAGCTATACTCTTATGGGCTGTATCAGATTTAGGTATGGACATGGATGAACTTAAGCAGACACATAAAGTTCTCCATGTTGAAACATTTAACTCAGAGAAGAAACGAAGTGGCGTGGCAATAAGGAAGGAGACCAACAACACAGTTCAGGTGCATTGGAAAGGAGCTGCAGAGATGATACTTGCAATGTGTTCTAATTATATTGATAGTAACGGCACAAGGAAGTCCCTTGATGAAGAACGGAGTAAACTTGAGAATATAATCCAAGGCATGGCTGCTAGTAGCCTACGATGTATTGCTTTTGCTCACATGGAGATTTCAGAAGATACTTATTATATCAACAAGGAGAAAGGACATCAAATCCTAAGAGAAAATGGCTTGACCTTGCTTGGAATTGTTGGCCTCAAGGATCCATGCCGACCGGACGTTGCAAAAGCTGTTGAAACTTGCAAACTTGCAGGCGTTGATATTAAGATGATCACTGGAGATAACATATTCACTGCAAAGGCAATAGCAACTGAATGTGGAATATTAGAACTTAACGATCATGCAAATGTGGGAGAAGTGGTGGAAGGCGTGGAATTCCGAAACTATACAGAGGAAGAGAGAATGGAGAAAGTTGAAAGGATCCGTGTTATGGCAAGATCATCCCCTTTGGACAAACTTTTGATGGTGCAATGCTTAAAAAAGAAAGGTCATGTAGTTGCAGTCACTGGAGATGGCACAAATGATGCACCTGCTCTTAAAGAAGCTGATATAGGACTTTCTATGGGGATCCAAGGCACTGAGGTTGCCAAGGAAAGTTCTGACATTGTCATCTTGGATGACAACTTCAGTTCTGTTGCCATTGTCATAAGATGGGGACGATGTGTTTATAACAACATCCAGAAATTTATCCAATTTCAACTAACCGTGAATATTGCAGCTCTTGTGATAAATTTTATTGCGGCAGTTTCTTCAGGGGATGTACCCCTAACAACAGTTCAACTACTATGGGTAAATCTCATTATGGATACTCTAGGTGCTTTGGCACTGGCTACAGAAAGGCCTACAAAGGAGTTAATGCAGAAACGACCAATAGGTAGAACGGAGCCTCTTATTACTATCATTATGTGGAGAAACCTTTTAGCTCAAGCTTTATATCAGATTGCTGTCCTGTTGGTTTTACAGTTCTATGGAAAGTCAATCTTCAATGTAAGTAAGGAGGTAAAGGATACTCTAATTTTTAATACTTTTGTTCTCTGCCAAGTTTTCAACGAGTTCAATTCAAGAAGTATAGAGAAACAAAATGTATTCAAAGGCATTCACAGAAACCACCTGTTTCTCGGAATTGTGGGGATTACCATTGTTCTTCAAATCCTAATGGTGGAAATCCTAAGGAAGTTTGCTGATACAGAGAGATTAACATGGATACAATGGGGAATTTGTATTGCAATAGCAGCTGTGTCATGGCCAATTGCTTGGATAGTAAAGCTCATACCTGTTTCAAACAAACGGTTCTTCAGCCATATTAAGTGGGTAAAATCATTGGTCTTCAAGATTAAGCAGGCTTTTTAA 3162 0.414 MLSKSTMSSSHGLKYDDKSFLIVTAKYTINNAKRRWRLVFTAIYFIRAMSKDVISKRNPHYYTKKLFQTQSSSFSSTVDIIEIPVTQHVDNGTNHYSLVPDADKARLADMVKDKALKAFSEFGGVEGVADVLGTIPTKGILGNDDDIAKRRELFGSNIYQRPPPKGFLHFVLEAFNDTTIIILLVCAGLSLGFGIKEHGPGEGWYEGGSIFVAVFLVVVVSALSNFRQERQFDKLSKISNNIKVQVLRNGRPQQVSIFEVLVGDIVSLKIGDQIPADGLFLDGYSLQVDESSMTGESDHVEIDPVNSPFLLSGAKVVDGYAQMLVTSVGTNTAWGQMMSSISRDTKERTPLQARLDKLTSSIGKIGLAVAFLVLLVLLIRYFTGNTRDENGVKEFKRGQTDLDDTFNAVVRIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADQAMVRKLSACETMGSATVICTDKTGTLTLNQMRVTKFWLGLENVIENFSNAMARNVLELFHQAVGLNTTGSVYKPSPGSEPEISGSPTEKAILLWAVSDLGMDMDELKQTHKVLHVETFNSEKKRSGVAIRKETNNTVQVHWKGAAEMILAMCSNYIDSNGTRKSLDEERSKLENIIQGMAASSLRCIAFAHMEISEDTYYINKEKGHQILRENGLTLLGIVGLKDPCRPDVAKAVETCKLAGVDIKMITGDNIFTAKAIATECGILELNDHANVGEVVEGVEFRNYTEEERMEKVERIRVMARSSPLDKLLMVQCLKKKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFSSVAIVIRWGRCVYNNIQKFIQFQLTVNIAALVINFIAAVSSGDVPLTTVQLLWVNLIMDTLGALALATERPTKELMQKRPIGRTEPLITIIMWRNLLAQALYQIAVLLVLQFYGKSIFNVSKEVKDTLIFNTFVLCQVFNEFNSRSIEKQNVFKGIHRNHLFLGIVGITIVLQILMVEILRKFADTERLTWIQWGICIAIAAVSWPIAWIVKLIPVSNKRFFSHIKWVKSLVFKIKQAF* 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03042 1053 NCBIfam calcium-translocating P-type ATPase, PMCA-type 113 1030 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Rops8g03042 1053 CDD P-type_ATPase_Ca_PMCA-like 147 906 - -
Rops8g03042 1053 Pfam haloacid dehalogenase-like hydrolase 464 787 - -
Rops8g03042 1053 NCBIfam HAD-IC family P-type ATPase 744 853 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops8g03042 1053 NCBIfam HAD-IC family P-type ATPase 407 492 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops8g03042 1053 NCBIfam HAD-IC family P-type ATPase 210 383 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops8g03042 1053 SUPERFAMILY Calcium ATPase, transduction domain A 241 340 IPR008250 -
Rops8g03042 1053 ProSitePatterns E1-E2 ATPases phosphorylation site. 468 474 IPR018303 -
Rops8g03042 1053 SUPERFAMILY Calcium ATPase, transmembrane domain M 122 1030 IPR023298 -
Rops8g03042 1053 FunFam Calcium-transporting ATPase 476 673 - -
Rops8g03042 1053 Gene3D - 144 342 - -
Rops8g03042 1053 SMART Cation_ATPase_N_a_2 121 195 IPR004014 -
Rops8g03042 1053 Pfam E1-E2 ATPase 242 444 - -
Rops8g03042 1053 SUPERFAMILY HAD-like 464 878 IPR036412 -
Rops8g03042 1053 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 473 670 IPR023299 GO:0000166
Rops8g03042 1053 FunFam Calcium-transporting ATPase 218 342 - -
Rops8g03042 1053 Pfam Cation transporting ATPase, C-terminus 858 1028 IPR006068 -
Rops8g03042 1053 Pfam Cation transporter/ATPase, N-terminus 123 190 IPR004014 -
Rops8g03042 1053 FunFam Calcium-transporting ATPase 668 818 - -
Rops8g03042 1053 SFLD C1.7: P-type atpase like 448 826 - -
Rops8g03042 1053 Gene3D - 463 818 IPR023214 -
Rops8g03042 1053 PRINTS H+-transporting ATPase (proton pump) signature 773 789 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops8g03042 1053 PRINTS H+-transporting ATPase (proton pump) signature 805 830 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops8g03042 1053 PRINTS H+-transporting ATPase (proton pump) signature 619 637 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops8g03042 1053 PANTHER CATION TRANSPORTING ATPASE 99 1031 - -
Rops8g03042 1053 PRINTS P-type cation-transporting ATPase superfamily signature 797 809 - -
Rops8g03042 1053 PRINTS P-type cation-transporting ATPase superfamily signature 466 480 - -
Rops8g03042 1053 PRINTS P-type cation-transporting ATPase superfamily signature 289 303 - -
Rops8g03042 1053 PRINTS P-type cation-transporting ATPase superfamily signature 773 792 - -
Rops8g03042 1053 PRINTS P-type cation-transporting ATPase superfamily signature 666 677 - -
Rops8g03042 1053 PRINTS P-type cation-transporting ATPase superfamily signature 688 698 - -
Rops8g03042 1053 SFLD p-type atpase 448 826 IPR044492 -
Rops8g03042 1053 FunFam Calcium-transporting ATPase 790 1032 - -
Rops8g03042 1053 Gene3D - 173 1028 - -
Rops8g03042 1053 Gene3D - 476 673 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03042 Rops-Chr8 67592668 67596693 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03042 14 1045 Primary Pumps ATPases AT3G63380 68.177 0.0 1367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03042 K01537 - gmx:100790034 1696.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03042 8 67592668 67596693 Rops8g03042 8 67592668 67596693 ECH