Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03040 ATGTTTCCCACAGCTGTTTCCAATTCAACTACTTTGTCCGAGGATGCAAGTGTTTGTTCTGGTACTAAAGTTCAGGACTTAGGTGGATTGAATCACATGGTCTCAACTATTTCTTCTCAGCAGCCTCAAAAGATCAAGAAAAAGAGAAGCCTCCCTGGAAACCCAGACCCAGATGCTGAAGTGATTGCGTTATCCCCTAAGACCCTTTTAGCCACCAATAGATTTGTTTGTGAGATCTGTCTCAAGGGTTTCCAGAGAGATCAGAACCTCCAGCTTCATAGGAGGGGCCATAACCTCCCTTGGAAGTTGAAGCAAAGGAACAGCAAAGAGGTCAAAAAGAAAGCTTACGTTTGCCCTGAACCTTCTTGTGTTCATCACAACCCTTCAAGGGCTCTGGGGGATCTTACAGGAATCAAGAAACATTACTGCAGAAAGCATGGAGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATATATGCTGTTCAGTCAGATTGGAAAGCTCACTCTAAAACTTGTGGTACTAGAGAATATAGATGTGATTGTGGAACCCTTTTTTCCAGAAAGGACAGCTTCATAACTCATAGGGCATTTTGTGATGCATTGGCTGAAGAAAGTGCAAGATTGTCAGCACACACAACAACAACACCAAACCCATTAGTCCAATCTCTCTTCCTCTTCCAAAACCACCAAATCACCAACTTCAGTCCTTGGGACTCATCACAAGAAAACCCTAACCCTAACAACATTGCTTCTGCACTTCACATCAAGCCTGAAGCTCAGACATTCCCTTCTCCCTCACTCCTTCAACAACCACCTTATGGCCACGACTTGATAACCTCACCCTTGGGGGACCTCCACGTGGCCACACAAGTACCCTCCTCCAATGCTGCCGCGTCAGCATACATGTCAGCAACTGCATTGCTTCAAAAGGCTGCAACCGTTGGAGCCGCTGCTGTTGGTGTCGGGCAACAGCGGTCAATGGGTCACGTGACTGAGTCTAGCATGGGCGAGTTTGGAACGGTGAGTCAACTCGACTCGGTGGTGGTGGTCCCAGAGTACATGATGAGCAGCGGCATGAGAGGGTTCCCCACCACACGGAACCTCAAGAGAGACCGTCTCACTAGGGATTTTCTGGGACTGACGGAGGATGCCGATGCCGTTGACGTTAGCCTCAACGTGAAAGATATGCTTACCTTCACGGGGGGTGTAGAGTACCACCAACCTCACTACGCCCCAACAAGGTTTTGA 1251 0.478 MFPTAVSNSTTLSEDASVCSGTKVQDLGGLNHMVSTISSQQPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSAHTTTTPNPLVQSLFLFQNHQITNFSPWDSSQENPNPNNIASALHIKPEAQTFPSPSLLQQPPYGHDLITSPLGDLHVATQVPSSNAAASAYMSATALLQKAATVGAAAVGVGQQRSMGHVTESSMGEFGTVSQLDSVVVVPEYMMSSGMRGFPTTRNLKRDRLTRDFLGLTEDADAVDVSLNVKDMLTFTGGVEYHQPHYAPTRF* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03040 416 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
Rops8g03040 416 MobiDBLite consensus disorder prediction 37 58 - -
Rops8g03040 416 SMART c2h2final6 75 97 IPR013087 -
Rops8g03040 416 SMART c2h2final6 151 171 IPR013087 -
Rops8g03040 416 SMART c2h2final6 116 146 IPR013087 -
Rops8g03040 416 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Rops8g03040 416 Gene3D Classic Zinc Finger 54 123 - -
Rops8g03040 416 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 36 383 IPR031140 -
Rops8g03040 416 FunFam protein indeterminate-domain 12-like 54 122 - -
Rops8g03040 416 SUPERFAMILY beta-beta-alpha zinc fingers 74 171 IPR036236 -
Rops8g03040 416 Gene3D Classic Zinc Finger 144 215 - -
Rops8g03040 416 FunFam protein indeterminate-domain 5, chloroplastic-like 129 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03040 Rops-Chr8 67519871 67523805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03040 15 406 IDZ Gene Family AT4G02670 52.323 4.91e-132 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops8g03040 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03040 K25870 - gmx:100788975 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03040 8 67519871 67523805 Rops6g01859 6 36427747 36431942 PCT
Rops6g01321 6 28594134 28597527 Rops8g03040 8 67519871 67523805 PCT