Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03034 ATGGAGCAGTATGAAATTCTGGAACAGATTGGCAAAGGTTCGTTTGGTTCTGCTCTGCTTGTGAGGCACAAGCACGAAAAGAAAAAGTATGTCCTCAAAAAGATCCGCCTTGCTCGCCAAAGTGACAGAACCCGTAGGTCTGCGCACCAGGAGATGGAGCTTATATCTAAAGTTCGAAATCCATTTATTGTGGAGTATAAAGATTCCTGGGTAGAAAAGGGTTGTTTTGTGTGTATCATCATCGGCTATTGTGAAGGAGGAGATATGGCTGAAGCTATAAAAAAGGCTAATGGTGTTAACTTTCCTGAAGAGAAGCTTTGTAAGTGGCTTGTCCAGTTGCTGATGGCACTTGATTACTTGCATGGAAATCATATTCTTCATCGTGACGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTGACTTTGGTCTTGCTAAAATGTTGACATCTGATGATCTTGCTTCCTCAATTGTGGGGACCCCAAGTTATATGTGCCCAGAGCTTCTTGCGGATATACCCTATGGCTCTAAGTCAGATATCTGGTCTTTGGGATGTTGTATTTACGAAATGGCCGCTCACAAGCCAGCTTTTAAAGCCTTTGACATGCAAGCATTGATTAACAAAATAAACAAGTCTATAGTAGCTCCACTGCCAACTATGTATTCTGGTGCTTTTCGAGGGCTAGTCAAAAGTATGCTGCGGAAAAATCCAGAGCTTAGGCCTACTGCTGCAGAGTTACTGAATCATCCACATCTTCAGCCTTATGTTCTTAAAATTCAGCTAAAATTAAATAGCCTCAGAAGTACTTTTCAATTCCAATGGCCTGAGTCAAACTACATAAGGAGAACTCGGTTTGTAGTGCCAGGATCTGTTTCTACTCTATCTGACCAAGATAAGTGCTGGTCATTAAGCAATGACAGGGCCTTGAATCCTAGTATTTCTGGAACTGAACAAGGTTCTCTGTGTTCTACTCAAAGAGCTCATGGATTATCCACTTGTTCAAAGGAGAAGCTCTGTGAATTTTCTGTTGGCAGGGTCCGTGATCAATGCAATACTAACGAATCAACAGCCATAGAGTTCTCAACAGTTGAGAGAACACCAAGATTGAGAGCAGCTAAAGATTCTGCTGCTGCCAGAAGGCAGATCATGGCACCAGCAAAGATATCCTATACTGGTTCAAAGCGTGTTTCACTTCCAGTGCCTCGTGCACCATCTGTAAAGTTTTCCCCACCAACTCGTAGAGCATCTCTTCCACTGCCTACAAGAGCCAGGAGATTGCAGAATTCCCAATGGCCTCTTGTGAAGATCCTTTCTTCCTGGTCCGTGGACCATCATCAACATCAGCTCAATGCTCCTCAGGCTCTGCAGTGA 1389 0.4298 MEQYEILEQIGKGSFGSALLVRHKHEKKKYVLKKIRLARQSDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAEAIKKANGVNFPEEKLCKWLVQLLMALDYLHGNHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSIVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAAHKPAFKAFDMQALINKINKSIVAPLPTMYSGAFRGLVKSMLRKNPELRPTAAELLNHPHLQPYVLKIQLKLNSLRSTFQFQWPESNYIRRTRFVVPGSVSTLSDQDKCWSLSNDRALNPSISGTEQGSLCSTQRAHGLSTCSKEKLCEFSVGRVRDQCNTNESTAIEFSTVERTPRLRAAKDSAAARRQIMAPAKISYTGSKRVSLPVPRAPSVKFSPPTRRASLPLPTRARRLQNSQWPLVKILSSWSVDHHQHQLNAPQALQ* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03034 462 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g03034 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Rops8g03034 462 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 457 - -
Rops8g03034 462 Gene3D Transferase(Phosphotransferase) domain 1 84 275 - -
Rops8g03034 462 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g03034 462 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Rops8g03034 462 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Rops8g03034 462 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Rops8g03034 462 FunFam Serine/threonine-protein kinase Nek3 86 349 - -
Rops8g03034 462 SUPERFAMILY Protein kinase-like (PK-like) 1 259 IPR011009 -
Rops8g03034 462 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g03034 462 CDD STKc_Nek 3 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03034 Rops-Chr8 67445608 67451432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03034 10 298 MAP Kinase Kinase Kinase AT1G53570 31.186 1.17e-39 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Rops8g03034 Pkinase 3.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03034 K08857 - gmx:100810347 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03034 8 67445608 67451432 Rops8g03034 8 67445608 67451432 ECH