Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03012 ATGTGTGCTGAGATGGAAAGTTGCATGAGCAGCAGCAACAACCATTGGAGAGCTGAGGAAGCCATTGGTGGCAACGCAGAAGCTCTTCAAGCCCTCAGAGAACTCATCATATACCCTCTTCAGTTCTCTCACCAAGCACACAAGCTTGGCCTTAAATGGCCAAGAGGGTTGCTGCTGTACGGTCCACCAGGCACTGGAAAGACAAGTTTGGTTCGAGCAGTTGTTCGGGAATGCGGGGCACATTTGACAATCATCAGTCCACACTCTGTTCATAGAGCACATGCTGGTGAAAGTGAGAGAATTCTCCGTGAGGCTTTTTCAGAGGCATCATCTCATGTAGCCTTGGGAAAGCCATCAGTTATCTTTATAGATGAAATAGACGCACTCTGTGCTCGTCGAGATTCCAAAAGGGAGCAAGATGTCCGAGTTGCCTCCCAACTCTTTACACTGATGGACTCGAACAAACCAACCTCTTCTACACCAGGTGTTGTTGTGATTGCATCAACTAACAGAGTGGATGCAATTGACCCTGCCCTAAGAAGGTCTGGACGTTTTGATGCTGAAATTGAACTATATACAAGGAAGATTCCCTTGGATCCCTGTCTTGACTTAAAGTCCGTTGCTGCGTCATGCAATGGATATGTCGGAGCTGATTTGGAGGCTCTGTGTCGTGAAGCTACCATGTTTGCGGTTAAAAGGTCCTCAAATACAAATAAAGATGCTAGTGATTTCAGTTTAACAATGGAAGATTGGAAGAATGCGAGGTCTGTTGTTGGTCCAAGTATAACAAGGGGTGTTACTGTGGAAATTCCCAAAGTGACCTGGGAAGACATTGGGGGATTGAAAGAATTGAAGAAAAAGGTCCAGCAAGCTGTTGAATGGCCTATTAAGCATTCTGCTGCATTTTCAAGATTGGGAATAACACCAGTACGTGGAATTCTTCTCCATGGTCCTCCAGGATGTTCCAAGACTACCCTTGCCAAAGCTGCTGCGCATGCTGCCCAGGCTTCTTTCTTTTCCCTGAGTGGTGCAGAATTATATTCGATGTATGTTGGAGAGGGGGAGGCTTTGCTTCGTAATACATTTCAGAGAGCACGTCTTGCAGCACCCAGTATAATATTTTTTGATGAGGCTGATGTGGTAGCTGGCAAACGGGGTGATAGTTCTAGCAATAGTTCTACAGTTGGAGAGAGGCTTTTATCCACTCTGCTGACTGAGATTGATGGCTTAGAAGAAGCTAAAGGAATTCTTGTTTTGGCAGCTACAAATCGCCCTTATGCAATTGATGCTGCACTTATGCGTCCCGGACGATTTGATCTGGTTCTTTATGTGCCACCACCTGATTTGGAGGCTCGATATGAGATACTTTGTGTGCATACGCATAAGATGAAAACAGGAAGTGATGTTGATCTCAGAAAACTAGCAGAAGATACTGAGCTATTCACAGGTGCTGAATTGGAGGGATTATGCAGAGAAGCTGGAATAGTAGCTCTAAGGGAAGACATATCTGCTACTGTTGTTTGTGATCGTCATTTTCAGATTGTGAAGAATTCTTTAAAACCAGCATTAACAAAAGCAGACATTGATTCATACTCTTCTTTTATGAAGACATCATCTAGAGCCATGTCTAGGAACTTTGAATCAGGTTTGAAACCAGATAAGAACAAGAAGGACAGGTTGGGTTATTTGTCTTTGGTTAAAATTGGTGTAGTTAGCTGTATGTTACTTGCTGCTGCTAAATACTATATCATGCATGGAGATCAAAGTGTACGTGATTTAGCCACCTGA 1788 0.439 MCAEMESCMSSSNNHWRAEEAIGGNAEALQALRELIIYPLQFSHQAHKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTIISPHSVHRAHAGESERILREAFSEASSHVALGKPSVIFIDEIDALCARRDSKREQDVRVASQLFTLMDSNKPTSSTPGVVVIASTNRVDAIDPALRRSGRFDAEIELYTRKIPLDPCLDLKSVAASCNGYVGADLEALCREATMFAVKRSSNTNKDASDFSLTMEDWKNARSVVGPSITRGVTVEIPKVTWEDIGGLKELKKKVQQAVEWPIKHSAAFSRLGITPVRGILLHGPPGCSKTTLAKAAAHAAQASFFSLSGAELYSMYVGEGEALLRNTFQRARLAAPSIIFFDEADVVAGKRGDSSSNSSTVGERLLSTLLTEIDGLEEAKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARYEILCVHTHKMKTGSDVDLRKLAEDTELFTGAELEGLCREAGIVALREDISATVVCDRHFQIVKNSLKPALTKADIDSYSSFMKTSSRAMSRNFESGLKPDKNKKDRLGYLSLVKIGVVSCMLLAAAKYYIMHGDQSVRDLAT* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03012 595 Gene3D - 7 189 IPR027417 -
Rops8g03012 595 FunFam Cell division control protein 48-B-like protein 263 447 - -
Rops8g03012 595 FunFam spermatogenesis-associated protein 5-like protein 1 447 533 - -
Rops8g03012 595 Gene3D - 190 262 - -
Rops8g03012 595 Pfam ATPase family associated with various cellular activities (AAA) 57 191 IPR003959 GO:0005524|GO:0016887
Rops8g03012 595 Pfam ATPase family associated with various cellular activities (AAA) 313 445 IPR003959 GO:0005524|GO:0016887
Rops8g03012 595 CDD RecA-like_CDC48_NLV2_r1-like 21 191 - -
Rops8g03012 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 271 532 IPR027417 -
Rops8g03012 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 260 IPR027417 -
Rops8g03012 595 FunFam Cell division control protein 48 homolog B 14 192 - -
Rops8g03012 595 SMART AAA_5 309 448 IPR003593 GO:0016887
Rops8g03012 595 SMART AAA_5 53 195 IPR003593 GO:0016887
Rops8g03012 595 Gene3D - 263 447 IPR027417 -
Rops8g03012 595 CDD RecA-like_CDC48_r2-like 284 444 - -
Rops8g03012 595 ProSitePatterns AAA-protein family signature. 416 434 IPR003960 GO:0005524|GO:0016887
Rops8g03012 595 Pfam AAA+ lid domain 202 244 IPR041569 -
Rops8g03012 595 Pfam AAA+ lid domain 468 513 IPR041569 -
Rops8g03012 595 Gene3D - 448 539 - -
Rops8g03012 595 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 394 413 - -
Rops8g03012 595 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 61 80 - -
Rops8g03012 595 PANTHER AAA-FAMILY ATPASE 18 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03012 Rops-Chr8 67104264 67114122 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03012 244 560 Calmodulin-binding Proteins AT3G56690 43.533 3.95e-81 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03012 - - gmx:100814288 1031.55