Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02998 ATGAACCGCTCCATCCGTAGACGAAGCTTGAAACGGAAGCTTGAACGAGACTTGAACAAAGATGAAGAAGATGAAGGAGATCGTAAAGTTCTGGTGCTGGATTCTCAAGAACCCCACCTAGATCTGTCTTCTGACATTCCTCAACAGGTTGCTTTACTCAATCTCGCTTTCTCATCCTCCGACTCAGGCCGTGACACTGCAAGGAAAGCCCTTTATATCCTCTCAGAATTCGCCAAAAACGATGAAACTGTGGATGCTGTGGTGAACAGTGGTGCTGTCCCTGCTCTGGTGAGGTTTCTTCAGGCACCACATGCGGTTAAAGGTGACGTTGACGATGACGATGTTACTGAGCTTTACCTGTATGAGATGCAAAAAGGATGTGCGTTCGTCCTTGGGCTTCTTGCAGTTAAACCAGAGCATCAGCAACTCATAGTTGATGCTGGAGCCTTGCCCTATCTTGTAGATTTGTTAAGGAGGCACAAGGATGGTAGCATTTCTCAAGCATTTACTGGTCTTCTTACGAAAGCAGCTGATGCAATAGCCGACCTTGCCCATGAAAATACTGAAATTAAGACCCTTGTCAGGATGGAAGGTGGTATCCCTCCTCTTGTTGAATTGCTTGAATTCAGTGATACAAAGGTACAGAGGGCAGCTGCAGGGGCCTTGCGAACTCTTGCATTTAAAAATGATGAAAATAAAAATCAGATAGTTGGATGCAATGCGCTACCCACTCTTGTGCTAATGCTTCAATCAGAGGATCCTACAATACATTATGAGGCGGTTGGCGTGATAGGAAATTTGGTCCACTCTTCGCCTAATATTAAGAAAGATGTTCTTCTAGCTGGGGCTTTACAACCAGTCATTGGGTTACTAAGTTCCTGCTGTTTGGAGAGCCAAAGAGAAGCAGCTCTTTTACTTGGTCAATTTGCTGCAACAGATTCAGATTGCAAGGTTCACATTGCCCAAAGAGGGGCTATAAAACCATTAGTTGACATGCTTAAGTCTCCAGATGCACACCTTAGGGAAATGTCAACTTTTGCGCTTGGGAGGTTGGCACAGGACTCACACAATCAAGCCGGTATTGCTCATAACGGAGCTATAGAGCCCCTGCTCAATCTTCTTGGCTCAAAGAATGGGTCCGTACAACACAATGCAGCTTTTGCTCTCTATGGCCTTGTTGAAAATGAGGACAATGTTGCAGATATTATTAAGGTTGGTGGTTTTCAAAAACTGCAAGATGGATGTTTCAAAGCTCAACCTACTAAAGAGTGTGTAGCAAAGACGTTAAAAAGATTAGAGGAGAAGATTCATGGGCGAGTACTGAAACACCTATTATATCTTATGCGCTTCACAGAAAAAGGTGTTCAAAGACGTGTAGTTCTTGCTCTTGCTCATTTATGTTCCTCTGATGATCATAAAACTATTTTCATTGACAATAATGGATTAAAATTGCTGCTGGATCTTCTTGAATCTACAAGCCTAAAGCAGAAGGGTGATGCTTCAGCAGCGCTTCACGAGTTGGCTACCAAAGCCACATCTGTCTCTCTTGTTGATACTGCTCCTCCATCACCAACTCCCCAGGTGTACTTGGGCGAGCAGTACGTAAACAATCCTAAACTTTCTGATGTCACATTCTTAGTTGAAGGTAAAAGATTTTATGCTCATAGAGTTTGTTTACTTGCATCTGATATATTTCGCGCAATGTTTGATGGGGGTTATAGGGAAAGGGAAGCCAAAGATATAGAGATTCCAAATATTAGATGGGATGTCTTTGAGTCGATGATGAGATTTATATACACTGGAACAGTAGATGTCAATTTGGATATTGCTCAGGAACTCCTCAAAGCTGCTGATCAGTATCTTCTGGATGGTCTTAAGCGTCTTTGTGAATATACTATTTCTCAGGATATTTCTGTGGAAAATGTTTCACTAATGTACGAAATGTCAGAGACTTTCAATGCAAAGTCATTAAGATTTGCGTGCATATTGTTTGTCCTGGAGCAATTTGATAAATTGAGTGCCAAACCATGGTGTTGTCGATTGGTTCGTGGCATTGTACCGGATATACGCGAATTCTTCACAGCTTTACTTACCAAGCTTCATTCAGCTAACTCGTGGGGATCCTTAGATTTGTAA 2136 0.4246 MNRSIRRRSLKRKLERDLNKDEEDEGDRKVLVLDSQEPHLDLSSDIPQQVALLNLAFSSSDSGRDTARKALYILSEFAKNDETVDAVVNSGAVPALVRFLQAPHAVKGDVDDDDVTELYLYEMQKGCAFVLGLLAVKPEHQQLIVDAGALPYLVDLLRRHKDGSISQAFTGLLTKAADAIADLAHENTEIKTLVRMEGGIPPLVELLEFSDTKVQRAAAGALRTLAFKNDENKNQIVGCNALPTLVLMLQSEDPTIHYEAVGVIGNLVHSSPNIKKDVLLAGALQPVIGLLSSCCLESQREAALLLGQFAATDSDCKVHIAQRGAIKPLVDMLKSPDAHLREMSTFALGRLAQDSHNQAGIAHNGAIEPLLNLLGSKNGSVQHNAAFALYGLVENEDNVADIIKVGGFQKLQDGCFKAQPTKECVAKTLKRLEEKIHGRVLKHLLYLMRFTEKGVQRRVVLALAHLCSSDDHKTIFIDNNGLKLLLDLLESTSLKQKGDASAALHELATKATSVSLVDTAPPSPTPQVYLGEQYVNNPKLSDVTFLVEGKRFYAHRVCLLASDIFRAMFDGGYREREAKDIEIPNIRWDVFESMMRFIYTGTVDVNLDIAQELLKAADQYLLDGLKRLCEYTISQDISVENVSLMYEMSETFNAKSLRFACILFVLEQFDKLSAKPWCCRLVRGIVPDIREFFTALLTKLHSANSWGSLDL* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02998 711 SUPERFAMILY ARM repeat 439 513 IPR016024 -
Rops8g02998 711 SUPERFAMILY ARM repeat 61 420 IPR016024 -
Rops8g02998 711 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 198 233 IPR000225 GO:0005515
Rops8g02998 711 Pfam Armadillo/beta-catenin-like repeat 313 352 IPR000225 GO:0005515
Rops8g02998 711 Pfam Armadillo/beta-catenin-like repeat 188 226 IPR000225 GO:0005515
Rops8g02998 711 Pfam Armadillo/beta-catenin-like repeat 229 268 IPR000225 GO:0005515
Rops8g02998 711 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 91 149 IPR000225 GO:0005515
Rops8g02998 711 MobiDBLite consensus disorder prediction 11 26 - -
Rops8g02998 711 Pfam BTB/POZ domain 533 635 IPR000210 GO:0005515
Rops8g02998 711 Gene3D Potassium Channel Kv1.1; Chain A 532 675 IPR011333 -
Rops8g02998 711 SMART BTB_4 541 637 IPR000210 GO:0005515
Rops8g02998 711 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 148 198 IPR000225 GO:0005515
Rops8g02998 711 MobiDBLite consensus disorder prediction 1 26 - -
Rops8g02998 711 SUPERFAMILY POZ domain 532 634 IPR011333 -
Rops8g02998 711 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 701 IPR044282 -
Rops8g02998 711 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 324 366 IPR000225 GO:0005515
Rops8g02998 711 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 240 282 IPR000225 GO:0005515
Rops8g02998 711 Gene3D - 173 295 IPR011989 -
Rops8g02998 711 Gene3D - 40 172 IPR011989 -
Rops8g02998 711 ProSiteProfiles BTB domain profile. 541 607 IPR000210 GO:0005515
Rops8g02998 711 SMART arm_5 354 394 IPR000225 GO:0005515
Rops8g02998 711 SMART arm_5 469 509 IPR000225 GO:0005515
Rops8g02998 711 SMART arm_5 80 136 IPR000225 GO:0005515
Rops8g02998 711 SMART arm_5 229 269 IPR000225 GO:0005515
Rops8g02998 711 SMART arm_5 187 227 IPR000225 GO:0005515
Rops8g02998 711 SMART arm_5 313 353 IPR000225 GO:0005515
Rops8g02998 711 SMART arm_5 137 185 IPR000225 GO:0005515
Rops8g02998 711 SMART arm_5 271 311 IPR000225 GO:0005515
Rops8g02998 711 Gene3D - 296 515 IPR011989 -
Rops8g02998 711 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 365 407 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02998 Rops-Chr8 66857940 66863160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02998 291 511 U-box Gene Family AT2G23140 30.131 9.56e-16 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Rops8g02998 BTB 2.1e-24 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02998 - - zju:107426408 969.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02998 8 66857940 66863160 Rops8g02998 8 66857940 66863160 ECH