Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02988 ATGACAAAAGCTCCTTTCCATTCCGTATTTAAGCTCTTGAAGGAAGATCAAATAATTGAAGGAGTGTGCTATAGCTATAGTAGAAAACGGTGTTGGGAGGGAACAATGGCACCACCACCAAATAGCAAGCTTCAAAGCATGTTGCAGGCTGCGGTGCAATCGGTTCAGTGGACTTATAGCATCTTCTGGCAACTTTGTCCTCAACAAGGGATTCTGAGGTGGGGTGAAGGATATTACAATGGAGCAATTAAGACAAGGAAAACAGTTGAAGCAATGGAGATAAGCACTGAGGAGGCTTGTGTCCAAAGAAGCCAGCAACTTAGAGAGCTTCATGAATTGTTGTCTGCTGAAGAAACTAACCCACAAACTCGTAGGCCTTTTGCTGCCTTGGAGGACCTAACGGAACCTGAATGGTTCTATTTGTTGTGTGTTTCCTTCTCCTTTCATCCTGGTGTCGGGTTGCCCGGAGCAGCATATGCCAAGAGGCAGCATTTATGGCTCACTGGTGCAAACGAAGTAGACAGAAACATATTTTCAAGAGCTATTCTTGCCAAGACAGTGGTGTGTATTCCTGTCTTGGAGGGTGTCGTTGAGTTCGGCACAACCGATAAGGTCCAAGAAGACCTTAATTTTATCGAACACGTAAAGAGCTTCTTCATAGATCACCACCCTCCCACGCCAAAGCCTGTCCCATCAGAAAATTCAGACTCCAATTCCACTCCTTCATACCCTGCCAATGCCATTTCCTCAGCCAATATTCCTAACCATGATGATGATAAAGAAGAAGGTAAAATAGATTCCCAAGCACAAGCAGTCCGTAACTGTTTCTCACTAATGGAACTGGACACATTGGAGGACTTCCGGGTCGGATCACCTGGTTATGGGTCAACCCATATGTGGGGACCGGTGGAGGAGCCAATGGCACAGGGTTCAGAGGGGTTGGAGCTGCTTCAACTTCAACAACCAGCTTCAGTACTTGTTCCCTCGGAAGACTTGGCACAAGGCGATGCCCACTACTCCCAAACCGTATCCACCATCCTTCAAAATAAATCCAGGTGGTTGCCGGAGCCACCCTCCATCCGCCACCTCACCGGTTCCTTCCGATCAGCTTTCACCGAGTGGACCACCGGCGTGGACAACCACCACCACACGGCGGTGGACGTCGTCACCTCACAGTGGCTTCTCAAGTGCATTCTCTTCACCATCCCTTACTTGCATGCTGCCAATAATTCCCTACAGGGGAAGGGGATGCCACGACACGAGGCAACCGATGGCCACGTGCTGGCAGAACGCCGCCGCCGTGAGAAGCTGAACGAGAGGTTCCTCATTCTAAGGTCGCTGGTGCCATTCGTGACAAAAACTGACAAGGCGTCTATATTAGGTGACACCATAGAGTATGTGAAACACTTGAAGCAGAAGATGAAGAACCTTGAAGAATGTAACCGTCAAATGGAGATGGATCAACGATGGATAATGACCAAGAATAAGAAGAAAAGGGTGAGGGAGGTGGAAGTGGAGGTTTCAATCATAGAGAGTGATGCTTTGTTGGAGGTGGAGTGCATGCACAGGGAAGGGTTGTTGCTTGATGTGATGAAAATGCTGAGGGAGTTAGGGGTGGAAGTGATGGTGGTGCAATCGTCGGTGAAGGATGATGGAGTGTTTGTGGCTGAGTTAAGGGCCAAGGTGAGGGAAAATGCGAATGCGAAGAAGGCAAGCATTGTGCAAGTGAAGAAGGCACTCAACTTGATTATACCTCCTCATCATCATCATAATCCATGTTCAGTAGCTGCTAATGGTTCGAGGGTTTGCATGGACTTAGGGTGCATGCAACATTTTCACGACTTGACTGAGACGAGCAGAGGAGACAATGCTGACAATGCTATGTCAGTTAACAGTTAG 1899 0.4813 MTKAPFHSVFKLLKEDQIIEGVCYSYSRKRCWEGTMAPPPNSKLQSMLQAAVQSVQWTYSIFWQLCPQQGILRWGEGYYNGAIKTRKTVEAMEISTEEACVQRSQQLRELHELLSAEETNPQTRRPFAALEDLTEPEWFYLLCVSFSFHPGVGLPGAAYAKRQHLWLTGANEVDRNIFSRAILAKTVVCIPVLEGVVEFGTTDKVQEDLNFIEHVKSFFIDHHPPTPKPVPSENSDSNSTPSYPANAISSANIPNHDDDKEEGKIDSQAQAVRNCFSLMELDTLEDFRVGSPGYGSTHMWGPVEEPMAQGSEGLELLQLQQPASVLVPSEDLAQGDAHYSQTVSTILQNKSRWLPEPPSIRHLTGSFRSAFTEWTTGVDNHHHTAVDVVTSQWLLKCILFTIPYLHAANNSLQGKGMPRHEATDGHVLAERRRREKLNERFLILRSLVPFVTKTDKASILGDTIEYVKHLKQKMKNLEECNRQMEMDQRWIMTKNKKKRVREVEVEVSIIESDALLEVECMHREGLLLDVMKMLRELGVEVMVVQSSVKDDGVFVAELRAKVRENANAKKASIVQVKKALNLIIPPHHHHNPCSVAANGSRVCMDLGCMQHFHDLTETSRGDNADNAMSVNS* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02988 632 Coils Coil 467 487 - -
Rops8g02988 632 SMART finulus 427 476 IPR011598 GO:0046983
Rops8g02988 632 Pfam Helix-loop-helix DNA-binding domain 426 471 IPR011598 GO:0046983
Rops8g02988 632 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 425 491 IPR036638 GO:0046983
Rops8g02988 632 MobiDBLite consensus disorder prediction 232 253 - -
Rops8g02988 632 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 421 470 IPR011598 GO:0046983
Rops8g02988 632 Gene3D - 419 494 IPR036638 GO:0046983
Rops8g02988 632 PANTHER TRANSCRIPTION FACTOR TT8 38 584 - -
Rops8g02988 632 MobiDBLite consensus disorder prediction 222 266 - -
Rops8g02988 632 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 44 219 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02988 Rops-Chr8 66721065 66734823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02988 36 584 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 44.883 1.70e-144 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops8g02988 bHLH-MYC_N 4.6e-45 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02988 - - aprc:113862120 678.707