Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02982 ATGAGCTTTCACATGAATAATGAAGATACACGCAGAGGTTTGAAAAGAAAGCCCTCAGAGATGGATCGAGGGCAAGAACAGGGATCATACAATATGAATTCTAGACCTCATGATAGGAACATGCTTCCTCCTGGTTGGTTAGACTGCCCGGCACATGGACAAGAACTAGGATGCATAATCCCTTCAAAGGTTCCGCTTGGTGAATCCTTCAATGATTACATTCCAAATCAACAATACACTCCCAAGCAAGCAATTCTTCAACAAAGAGCATTAGGTAGAGAACTCGGTTTAGTGATTGATATGACAAATACTACTCGTTACTATCCCGTATCAGATTGGACAAAAGAAGGGATTGGTCATGTCAAGATAAGATGCAAAGGAAGAGATTCTGTACCTGACGATGAATCTGTAAAAAGATTTTGTGATGAGGTTCTAAATTTTTGCTCCCGAAGAACAAACACAAAGAAGTATATACTTGTACACTGCACGCATGGGCATAATCGTACAGGTTATATGATAGTTCATTTTCTTGTGCAAACGGAATCAATTTCTGTGACTGAGGCTATAAATAAATTTGCTTGGGCACGTCACCCTGGAATTTACAAGCAGGATTACATTGACGCCCTATACACGTTTTATCATCAAAAGAAGCCTGAAGATCTTGTTTGTCCACAAACACCAGAATGGAAGAGGCTTTCTGATCCTGAGTTTCATGGTGTGGCTGTCCCAGCTATAGACAACTATGGAGACATTCCACAGCAGGAGAATATTGTGAGGAATGAAGTATTGACAAATGATGATGTTTTGGGAGATCCCGTTCCTCCAAACGAGCTGCGTACAATGCAAGAAGTTTGTTATCAACTGCTCAAGTTGGGCACAGGGGGAAGAGGACGACTACAGTTTCCTGGATCACACCCAGTTTCTCTTAACAGGGACAATCTTCAGCTCTTAAGACAAAGATATTACTATGCCACATGGAAAGCCGATGGGACACGATATATGATGCTGATTACTTGCGATGGTTGTTATCTGATTGACAGAAAATTTCTTTTTCGACGGATCAAAATGCGGTTTCCTTGCAGATACTCAAATGGGGGTACACCTGAGAGGAATCACCACTACACATTACTTGATGGGGAGATGATTATTGACATGGATCCACATACACAGAAGCAAGAGAGAAGATACCTCATCTATGATTTGATGGCAATCAATCAAGTCTCTTTGACAGAGCTACCATTCTCTGAAAGGTGGAAATTGCTGGAGAAAGAAGTAATTGAACCTCGTAACATGGAACGTGAGGGCCTTTCCAAAAGTGTAAATCCTTATTATAGATACGACTTGGAACCATTTAGTGTGAGGAGGAAGGGTTTTTGGTTCCTAAGTACTGTGTCAAAGCTCCTTCATAAATTCATTCCACAACTCTCGCACTCATCAGATGGTCTCGTATTCCAGGGTTGGGATGATCCATATGTCCCCCGCACACATGAAGGGCTTCTGAAGTGGAAATACCCGGAGATGAACTCTGTTGATTTCCACTGTGAGGTGGGAGCTGGTGATCGTCCCCTGCTTTTTCTGTTTGAACGTGGAAAGAAGAAGTTAATGGAAGGGAATAATGTTATTTTTAAAGATGCATCAGATATTTCTTCCTATTCAGGGAAGATCATTGAGTGCTACTGGGATCCTGTGGAGCATCATTGGGTCTGTATGCGGATCAGAACTGACAAAGCAACTCCAAATGAGATCAATACCTATAGAAAGGTAATGCGAAGCATAAAGGATAACATCACAGAAGAGGTCCTGTTGAATGAGATCAATGAGATCATTCGCCTACCCTTGTATGCAGACAGAATACAAAGGGATATCAAAGCCCACCAGCATATGGTCTCTTCACGGCGCAACTTGGAAATTTCAGGGGCTGGTTCAACTATTGATTGGGATCAAAATTTACTCTTTCCCTTTGTGTTTCTTCTCTTTTTGGAAACTTGTTATGCTCAACTCACCGTTCTGCCTTGTTCGTTGTGGCGGTTGTCTTCTGTGTTGCTCTCCCTTCCTCTCGACAAGACACATCCACTGCCAGCTTCGTCTGCTATATTCAATTGCAACTGTGCAAACAGAGCAGGTGGAGCCATGTCGAGGATATGTGTGAAGAATCTCCCAAAATATGTTGGAGAGGATCGTCTAAGAGAAGTATTTTCTCAGAAAGGAGAAATCACTGATGTCAAGCTTATGCATACCAAAGATGGTAAGAGTCGCCAATTTGCTTTTATTGGATTTCATACGGACCACGAAGCTCAGGAAGCTATTCGATATTTCAATAGATCTTACCTTGACACATCTAGAATTACTTGTGAGGTGGCTCAAAAACGTGGCGATGCAAATCTTCCTCGTCCATGGAGTCGATATTCAACAAAGAAAGACAATAAAGCAACCGCCCCAGATGCGAACAAACATGCTAGAGTTAAAAAACAAGGAGACGGTTCTAATGACATTGTTGATATTGATGACCCACAGCTTCAAGATTTTCTTCAGGTCATGCAACCTCGGACTAAATCTAAACTGTGGGCAAATGATACATCAATTGTATCTGATGTTGGCAACAACCAAGCAGTATCAAATAAGAACAGCACAGATACAACAGTTGCAATCCATCCCATAGCTCAAAGTGGCTCATTAGTGGATGGGTTTCCAAATAATCCTGAACCCAACAAGTCACGTGAGCTTGAACATGATGTAGTTTCTGATATGGATTATTTCAAGAGTAGAGTGACAAAGGAGTGGTCTGATTCTGAAAGTAGCGATGATGAAGATGATGACGACGACAATGATTCGGGATCCGGTGATGATGATGACAAAGTCAATCATTGTCATGCTAATGAACATGAAGAAAATTATGATAGTAACCCTTCCAAAAGAATCGCCAGAAATGGTTCTCAAGAGTTAGACCTAGAGGGGCAAGAAGATACTCAGAGAGAGGATGTTGACCATGATAAGGCTCAAGTGAATGAAACTGAGCAAGGGGGCCAACTATCAAATCCAAATGATGAGAAAGGAGTTTTTGAGTCCTGTCGACTGTTTGTCCGAAATTTGCCATATACGACCAATGAGGAGGAACTGGAAGAGCATTTCAGTCAGTTTGGTAGTGTCTCCCAGGTTCATCTAGTTGTTGACAAAGATACAAAACGATCCAAAGGAATAGCATATATTCTTTTTTCAGGTCCAGAATTTGCAGCCAGGGCACTAGAAGAGTTAGATAATTCAATCTTTCAAGGAAGATTGTTGCATGTTATGCCAGCCTTACAAAAACCTTCAAACAATGATGAGGGCAATGTTTCAAAGGACCAAAATTCTAAAACTCTTAAAAAACGGAGGCAGGAAGAGAGGAAAGCGGCTGAAGCAAGTGGAGATACCAGAGCATGGAATAGTTTGTTCATGCGCCCTGATACTGTTGTGGAAAACATTGCTCGGAAATATGGCATTAGTAAAAGTGATTTACTTGACCGAGAAGCTGATGATCTTGCTGTACGTATTGCTCTCGGAGAAACTCAAGTGATTTCAGAGACAAAAAAGGCATTTACAAATGCTGGAGTGAATGTGGAGTCTTTGGAGGAACTTGTTAATGGTAAAGTTGATGGCTTGAAAAGAAGTAACCATGTGCTTTTAGTGAAGAACTTGCCCTATGGTGCTACGGAAAATGAACTTGCGAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTCCAACAAAAACATTGGCCCTGGTTGTTTTCCTCGAACCAGCAGAAGCTAAAGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTACAAGGATGCTCCATTATACTTGGAGTGGGCTCCTGCCAATGTTCTTAGCCAGACATCTAAAAATAATGAAATGAATGGTGGAATTGGTGAAAATGACGCCAAGCGGCAGATATTGGAGCAAAACGTGGAAAGAATATCAGAAGTGGATATTGATCCAGACAGAGTAGAGGCTCGTTCCCTGTTTGTCAAGAACCTAAATTTCAAGACAACAGATGAGAGTTTGAGGAAACATTTTAGTGAACACATGAAAGAGGGAAGAATTTTGAGTGTTAAGGTGAAGAAGCATTTGAAAAATGGGAAAAATGTTTCTATGGGGTTTGGATTTGTTGAGTTTGACTCCACAGAGACTGCTACAAATGTTTGCAGAGATTTACAGGGGACTGTTTTGGATGGGCATGCTCTTATTTTACAGCTTTGTCATGTCAAGAATCATGGACAAGTACAAAAGGCAGTCGAGAAAGATAAGAGTTCTACAAAATTGCTTGTAAGAAATGTTGCTTTTGAGGCAACAGAGAAGGATCTGAGACAATTGTTTAGCCCATTTGGCCAGGTTAAAAGCTTAAGGTTACCAATGAAGTTTGGAAGTCATAGAGGCTTTGCTTTTGTAGAGTATGTTACTCAGCAGGAGGCACAAAATGCTCTTAAAGCACTTTCAAGCACCCACTTGTATGGCAGGCATTTGGTGATAGAGAGAGCGAAAGAAGGTGAGAGTTTGGATGAACTGCGGGCTCGAACAGCTGCTCAATTTAGTGAGTATGATGGATTTCAAAACGCCACTAAGTTATCCAAGAAAAGGAAGCTCATCAATATCATAGATGAAGGAAAGATGAAGCTTGAAAGGATTGCTGATTAA 4686 0.4114 MSFHMNNEDTRRGLKRKPSEMDRGQEQGSYNMNSRPHDRNMLPPGWLDCPAHGQELGCIIPSKVPLGESFNDYIPNQQYTPKQAILQQRALGRELGLVIDMTNTTRYYPVSDWTKEGIGHVKIRCKGRDSVPDDESVKRFCDEVLNFCSRRTNTKKYILVHCTHGHNRTGYMIVHFLVQTESISVTEAINKFAWARHPGIYKQDYIDALYTFYHQKKPEDLVCPQTPEWKRLSDPEFHGVAVPAIDNYGDIPQQENIVRNEVLTNDDVLGDPVPPNELRTMQEVCYQLLKLGTGGRGRLQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITCDGCYLIDRKFLFRRIKMRFPCRYSNGGTPERNHHYTLLDGEMIIDMDPHTQKQERRYLIYDLMAINQVSLTELPFSERWKLLEKEVIEPRNMEREGLSKSVNPYYRYDLEPFSVRRKGFWFLSTVSKLLHKFIPQLSHSSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFHCEVGAGDRPLLFLFERGKKKLMEGNNVIFKDASDISSYSGKIIECYWDPVEHHWVCMRIRTDKATPNEINTYRKVMRSIKDNITEEVLLNEINEIIRLPLYADRIQRDIKAHQHMVSSRRNLEISGAGSTIDWDQNLLFPFVFLLFLETCYAQLTVLPCSLWRLSSVLLSLPLDKTHPLPASSAIFNCNCANRAGGAMSRICVKNLPKYVGEDRLREVFSQKGEITDVKLMHTKDGKSRQFAFIGFHTDHEAQEAIRYFNRSYLDTSRITCEVAQKRGDANLPRPWSRYSTKKDNKATAPDANKHARVKKQGDGSNDIVDIDDPQLQDFLQVMQPRTKSKLWANDTSIVSDVGNNQAVSNKNSTDTTVAIHPIAQSGSLVDGFPNNPEPNKSRELEHDVVSDMDYFKSRVTKEWSDSESSDDEDDDDDNDSGSGDDDDKVNHCHANEHEENYDSNPSKRIARNGSQELDLEGQEDTQREDVDHDKAQVNETEQGGQLSNPNDEKGVFESCRLFVRNLPYTTNEEELEEHFSQFGSVSQVHLVVDKDTKRSKGIAYILFSGPEFAARALEELDNSIFQGRLLHVMPALQKPSNNDEGNVSKDQNSKTLKKRRQEERKAAEASGDTRAWNSLFMRPDTVVENIARKYGISKSDLLDREADDLAVRIALGETQVISETKKAFTNAGVNVESLEELVNGKVDGLKRSNHVLLVKNLPYGATENELAKMFGKFGSLDKIILPPTKTLALVVFLEPAEAKAAFRGLAYKRYKDAPLYLEWAPANVLSQTSKNNEMNGGIGENDAKRQILEQNVERISEVDIDPDRVEARSLFVKNLNFKTTDESLRKHFSEHMKEGRILSVKVKKHLKNGKNVSMGFGFVEFDSTETATNVCRDLQGTVLDGHALILQLCHVKNHGQVQKAVEKDKSSTKLLVRNVAFEATEKDLRQLFSPFGQVKSLRLPMKFGSHRGFAFVEYVTQQEAQNALKALSSTHLYGRHLVIERAKEGESLDELRARTAAQFSEYDGFQNATKLSKKRKLINIIDEGKMKLERIAD* 1562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02982 1561 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 138 207 IPR000387 GO:0016311|GO:0016791
Rops8g02982 1561 FunFam Multiple RNA-binding domain-containing protein 1 1209 1314 - -
Rops8g02982 1561 MobiDBLite consensus disorder prediction 1100 1134 - -
Rops8g02982 1561 FunFam RNA-binding motif protein 19 711 810 - -
Rops8g02982 1561 FunFam mRNA capping enzyme, putative 264 501 - -
Rops8g02982 1561 FunFam Nucleotide/nucleic acid binding protein 1332 1427 - -
Rops8g02982 1561 Gene3D Protein tyrosine phosphatase superfamily 17 236 IPR029021 -
Rops8g02982 1561 FunFam mRNA capping enzyme family protein 502 611 - -
Rops8g02982 1561 ProSitePatterns Tyrosine specific protein phosphatases active site. 160 170 IPR016130 GO:0016311|GO:0016791
Rops8g02982 1561 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 712 789 IPR000504 GO:0003723
Rops8g02982 1561 SUPERFAMILY Nucleic acid-binding proteins 506 619 IPR012340 -
Rops8g02982 1561 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1023 1101 IPR000504 GO:0003723
Rops8g02982 1561 MobiDBLite consensus disorder prediction 1114 1134 - -
Rops8g02982 1561 SMART rrm2_1 1337 1415 IPR003954 GO:0003676
Rops8g02982 1561 SMART rrm2_1 1024 1097 IPR003954 GO:0003676
Rops8g02982 1561 SMART rrm2_1 1437 1508 IPR003954 GO:0003676
Rops8g02982 1561 SMART rrm2_1 713 785 IPR003954 GO:0003676
Rops8g02982 1561 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 282 504 - -
Rops8g02982 1561 Gene3D - 913 1113 IPR012677 -
Rops8g02982 1561 SUPERFAMILY RNA-binding domain, RBD 1011 1111 IPR035979 GO:0003676
Rops8g02982 1561 Gene3D - 1428 1532 IPR012677 -
Rops8g02982 1561 Gene3D - 1212 1310 IPR012677 -
Rops8g02982 1561 MobiDBLite consensus disorder prediction 1 46 - -
Rops8g02982 1561 SUPERFAMILY RNA-binding domain, RBD 1335 1513 IPR035979 GO:0003676
Rops8g02982 1561 Gene3D DNA ligase/mRNA capping enzyme 256 501 - -
Rops8g02982 1561 CDD RRM1_MRD1 712 787 - -
Rops8g02982 1561 MobiDBLite consensus disorder prediction 890 955 - -
Rops8g02982 1561 CDD RNA_5'-triphosphatase 45 210 - -
Rops8g02982 1561 CDD RRM4_RBM19_RRM3_MRD1 1218 1289 - -
Rops8g02982 1561 FunFam mRNA capping enzyme family protein 38 250 - -
Rops8g02982 1561 SMART dsp_5 74 215 IPR020422 GO:0006470|GO:0008138
Rops8g02982 1561 SUPERFAMILY RNA-binding domain, RBD 712 798 IPR035979 GO:0003676
Rops8g02982 1561 CDD RRM5_RBM19_like 1337 1417 IPR034423 -
Rops8g02982 1561 MobiDBLite consensus disorder prediction 8 23 - -
Rops8g02982 1561 Gene3D - 704 830 IPR012677 -
Rops8g02982 1561 Gene3D - 1311 1427 IPR012677 -
Rops8g02982 1561 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1336 1419 IPR000504 GO:0003723
Rops8g02982 1561 MobiDBLite consensus disorder prediction 802 830 - -
Rops8g02982 1561 Pfam mRNA capping enzyme, C-terminal domain 534 602 IPR013846 -
Rops8g02982 1561 MobiDBLite consensus disorder prediction 795 831 - -
Rops8g02982 1561 Pfam Dual specificity phosphatase, catalytic domain 94 213 IPR000340 GO:0008138|GO:0016311
Rops8g02982 1561 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1438 1505 IPR000504 GO:0003723
Rops8g02982 1561 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 714 782 IPR000504 GO:0003723
Rops8g02982 1561 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1338 1412 IPR000504 GO:0003723
Rops8g02982 1561 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1025 1095 IPR000504 GO:0003723
Rops8g02982 1561 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1220 1281 IPR000504 GO:0003723
Rops8g02982 1561 CDD RRM6_RBM19_RRM5_MRD1 1436 1510 - -
Rops8g02982 1561 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1436 1512 IPR000504 GO:0003723
Rops8g02982 1561 CDD Adenylation_mRNA_capping 276 504 IPR001339 GO:0004484|GO:0005524|GO:0006370
Rops8g02982 1561 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1218 1290 IPR000504 GO:0003723
Rops8g02982 1561 Gene3D - 502 611 IPR012340 -
Rops8g02982 1561 CDD RRM3_RBM19_RRM2_MRD1 1024 1097 - -
Rops8g02982 1561 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 42 230 IPR029021 -
Rops8g02982 1561 MobiDBLite consensus disorder prediction 930 947 - -
Rops8g02982 1561 FunFam Multiple RNA-binding domain-containing protein 1 1430 1535 - -
Rops8g02982 1561 PANTHER MRNA-CAPPING ENZYME 38 616 - -
Rops8g02982 1561 SUPERFAMILY RNA-binding domain, RBD 1215 1300 IPR035979 GO:0003676
Rops8g02982 1561 SMART rrm1_1 1437 1508 IPR000504 GO:0003723
Rops8g02982 1561 SMART rrm1_1 713 785 IPR000504 GO:0003723
Rops8g02982 1561 SMART rrm1_1 1219 1286 IPR000504 GO:0003723
Rops8g02982 1561 SMART rrm1_1 1024 1097 IPR000504 GO:0003723
Rops8g02982 1561 SMART rrm1_1 1337 1415 IPR000504 GO:0003723
Rops8g02982 1561 Pfam mRNA capping enzyme, catalytic domain 305 503 IPR001339 GO:0004484|GO:0005524|GO:0006370
Rops8g02982 1561 MobiDBLite consensus disorder prediction 903 929 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02982 Rops-Chr8 66560257 66605005 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02982 25 624 Protein tyrosine phosphatase (PTP) family AT3G09100 61.842 0.0 785
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02982 K14787 - gmx:100798742 1274.23