Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02967 ATGGCTACTATGCTTGCTCTCAGGAATTCTTCTTCTTCTTCTTGCAAGCGTCTCTTCCCCTTCCCCTTCTCCTCTCAAATCCACTCTTCTTTCTGTCGTTCCCCTCTCTCTCAACCCACTTTCCCAAATGACACTTCCTCTTCCTCTTCTTCTTATTCTTCCAACCCTTGGTGGAGATCCATGGCCACTTTCACCAGAACAAAACCACATGTTAACGTTGGAACTATTGGTCACGTGGATCACGGGAAGACCACACTCACTGCAGCAATCACAAAGGTACTTGCTGATGAAGGGAAAGCTAAAGCTATAGCCTTTGATGAAATCGATAAGGCCCCAGAAGAGAAGAAGAGAGGAATCACAATTGCAACGGCACATGTTGAGTATGAGACCGCAAAACGACACTATGCACATGTAGACTGCCCTGGACATGCAGATTATGTTAAAAATATGATTACGGGAGCTGCCCAAATGGATGGTGGTATACTTGTTGTATCAGCACCTGATGGACCAATGCCTCAAACCAAGGAGCACATTCTTCTTGCTCGCCAAGTTGGTGTGCCATCTCTTGTGTGCTTTTTAAATAAAGTTGATGCTGTCGATGATCCTGAGTTGTTAGAGCTTGTAGAAATGGAGCTTCGTGAGCTTCTGAGCTTCTACAAGTTCCCTGGAGATGACATACCTATCATTAGAGGTTCAGCATTGTCCGCTTTACAGGGTACAAATGATGAGATTGGAAAAAAAGCTATTCTGAAATTGATGGAAGCTGTAGATGCTTACATTCCTGATCCTGTTCGCCAGCTCGACAAGCCTTTCCTCATGCCAATTGAAGATGTGTTTTCAATTCAGGGACGAGGAACAGTAGCTACAGGCCGTGTTGAACAAGGGATCATTAAAGTTGGTGATGAAGTTGAGGTTTTGGGTCTGATGCAGGGTGGTCCTCTGAAAACAACAGTAACTGGAGTTGAGATGTTCAAGAAGATTTTGGATCAAGGACAGGCTGGTGATAATGTTGGTCTTCTTCTCCGTGGTCTGAAACGTGAAGACATTCAACGTGGTCAGGTCATTGCTAAGCCTGGTTCTGTAAAAACATCCAAGAAATTTGAGGCAGAGATATATGTACTCACAAAGGATGAGGGTGGGCGACACACTGCTTTCTTTTCTAACTATAGACCCCAGTTTTACTTGAGGACTGCTGATGTCACTGGAAAAGTAGAGTTGCCTGAAAATGTTAAGATGGTTATGCCTGGAGACAATGTTACTGCTGTGTTTGAATTGATTTCACCTGTTCCACTTGAACCAGGGCAAAGATTTGCCTTGAGAGAGGGTGGCAGAACAGTTGGTGCAGGTGTGGTGTCAAAAGTACTGAGCTAA 1371 0.4442 MATMLALRNSSSSSCKRLFPFPFSSQIHSSFCRSPLSQPTFPNDTSSSSSSYSSNPWWRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLADEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDDIPIIRGSALSALQGTNDEIGKKAILKLMEAVDAYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGIIKVGDEVEVLGLMQGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGQVIAKPGSVKTSKKFEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTADVTGKVELPENVKMVMPGDNVTAVFELISPVPLEPGQRFALREGGRTVGAGVVSKVLS* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02967 456 Pfam Elongation factor Tu GTP binding domain 68 261 IPR000795 GO:0003924|GO:0005525
Rops8g02967 456 CDD EFTU_II 271 359 IPR033720 -
Rops8g02967 456 Pfam Elongation factor Tu C-terminal domain 360 454 IPR004160 -
Rops8g02967 456 PANTHER ELONGATION FACTOR TU-RELATED 63 455 - -
Rops8g02967 456 FunFam Elongation factor Tu 266 396 - -
Rops8g02967 456 NCBIfam elongation factor Tu 60 455 IPR004541 GO:0003746|GO:0005525|GO:0006414
Rops8g02967 456 CDD EFTU_III 362 451 - -
Rops8g02967 456 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 365 455 IPR009001 -
Rops8g02967 456 Gene3D Translation factors 266 396 - -
Rops8g02967 456 Coils Coil 455 456 - -
Rops8g02967 456 SUPERFAMILY Translation proteins 265 361 IPR009000 -
Rops8g02967 456 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 286 IPR027417 -
Rops8g02967 456 Gene3D Translation factors 400 455 - -
Rops8g02967 456 PRINTS GTP-binding elongation factor signature 72 85 IPR000795 GO:0003924|GO:0005525
Rops8g02967 456 PRINTS GTP-binding elongation factor signature 189 198 IPR000795 GO:0003924|GO:0005525
Rops8g02967 456 PRINTS GTP-binding elongation factor signature 152 163 IPR000795 GO:0003924|GO:0005525
Rops8g02967 456 PRINTS GTP-binding elongation factor signature 136 146 IPR000795 GO:0003924|GO:0005525
Rops8g02967 456 PRINTS GTP-binding elongation factor signature 116 124 IPR000795 GO:0003924|GO:0005525
Rops8g02967 456 Pfam Elongation factor Tu domain 2 285 355 IPR004161 GO:0005525
Rops8g02967 456 Hamap Elongation factor Tu [tuf]. 59 456 IPR004541 GO:0003746|GO:0005525|GO:0006414
Rops8g02967 456 Gene3D - 60 263 IPR027417 -
Rops8g02967 456 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 109 124 IPR031157 -
Rops8g02967 456 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 68 264 IPR000795 GO:0003924|GO:0005525
Rops8g02967 456 CDD EF_Tu 69 263 IPR041709 -
Rops8g02967 456 NCBIfam small GTP-binding protein domain 71 207 IPR005225 GO:0005525
Rops8g02967 456 FunFam Elongation factor Tu 59 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02967 Rops-Chr8 66384508 66388499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02967 66 454 Eukaryotic Initiation Factors Gene Family AT5G60390 30.505 4.08e-46 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02967 K02358 - gmx:100791600 803.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02967 8 66384508 66388499 Rops8g02967 8 66384508 66388499 ECH