Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02951 ATGAAGGACAAGGTGGATTCCCCTGTTGGTGTTCTTGAGGACTATTTCAAAAGCTCAGATTCAGAAACAAGTTCTTCCAAAGAACCCAGTGTAGATTCTGAGTCTCAAGATAAGCCAAAATACAGTTCTAGGTGGCATACCTTTCTCCAATTGTTGAGGACCAAATCAAAGAAGCCCATAGCTACATTGCATCCTCTAAGTGTCCTCAAGCTCTCAAGAATAATGAGTAGTAGCATGAGGGAGACTATACTTCCAAGTAGTGGCATAGATGCAGATTCATCCTTACACAGTTCACCATGGAAGATCTTTACCCAACGTGAGATCCAAATTGCAACCAATTATTTTTGCCAAGAAAATTTTCTTGGGAAGGGTGGTTATGCTGATGTTTACAAAGGGTGTTTGCCAAATCATCAGTTAGTAGCAATTAAACGGCTAACAAGAGGAACAATGGATGAAACCACAGGGGACTTCTTATTAGAACTTGGCATAATGGCTCATGTAAATCATCCCAATACAGCTAAGTTGGTTGGTTATGGTGTGGAAGGAGGAATGTATCTAGTGCTTGAATTGTCTGAAAAAGGGAGCCTAGCTTCAGTGCTTTATGGTTCCAAGGAGAAACTACCGTGGTCTATTAGGCAGAAAATAGCATTAGGAACAGCTAATGGTATATTATATCTTCATGAAGGTTGTCAAAGAAGAATAATCCATAGAGATATAAAAGCTGCAAATATCTTGCTTACTGAGGACTTTGAACCGCAGATTTGTGATTTTGGGCTAGCAAAATGGCTACCAGAGAATTGGACTCATCATTCCGTTTCAAAATTTGAAGGAACTTTTGGCTACCTTGCTCCTGAATACTTGCTTCATGGGATAGTAGATGAGAAAACAGATGTATTTGCCTTTGGTGTAGTGCTATTAGAATTAGTCACTGGTAGGCGAGCACTTGATTATTCACAACAAAGCCTTGTTCTGTGGGCAAAACCTTTGTTGAAAAAGAATGATATTAGGGATCTGATTGATCCTTCACTAGCCAATGACTTTGACATTAGGCAGATTAATATTATGCTCTTGGCAGCTTCTTTATGCATTCAACAATCCTCAATTCGTCGTCCCTCTATGAGACAGGTTGTACAGCTTCTGAATGGTAACCTTAGCTGCTTTAAGTTCACCAAGAAATCTAGACTTCCATTCTTTGAAAAGATCTTTCAAGAAGAACACCTTGACTCTGATTAA 1233 0.3933 MKDKVDSPVGVLEDYFKSSDSETSSSKEPSVDSESQDKPKYSSRWHTFLQLLRTKSKKPIATLHPLSVLKLSRIMSSSMRETILPSSGIDADSSLHSSPWKIFTQREIQIATNYFCQENFLGKGGYADVYKGCLPNHQLVAIKRLTRGTMDETTGDFLLELGIMAHVNHPNTAKLVGYGVEGGMYLVLELSEKGSLASVLYGSKEKLPWSIRQKIALGTANGILYLHEGCQRRIIHRDIKAANILLTEDFEPQICDFGLAKWLPENWTHHSVSKFEGTFGYLAPEYLLHGIVDEKTDVFAFGVVLLELVTGRRALDYSQQSLVLWAKPLLKKNDIRDLIDPSLANDFDIRQINIMLLAASLCIQQSSIRRPSMRQVVQLLNGNLSCFKFTKKSRLPFFEKIFQEEHLDSD* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02951 410 PANTHER OS08G0249100 PROTEIN 6 408 IPR046958 -
Rops8g02951 410 SMART serkin_6 115 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02951 410 SUPERFAMILY Protein kinase-like (PK-like) 94 380 IPR011009 -
Rops8g02951 410 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 192 394 - -
Rops8g02951 410 ProSiteProfiles Protein kinase domain profile. 115 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02951 410 Pfam Protein kinase domain 118 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02951 410 MobiDBLite consensus disorder prediction 1 39 - -
Rops8g02951 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Rops8g02951 410 ProSitePatterns Protein kinases ATP-binding region signature. 121 143 IPR017441 GO:0005524
Rops8g02951 410 Gene3D Phosphorylase Kinase; domain 1 87 189 - -
Rops8g02951 410 Gene3D Transferase(Phosphotransferase) domain 1 192 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02951 Rops-Chr8 66193280 66196090 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02951 103 382 Receptor kinase-like Gene Family AT1G53420 42.014 5.55e-68 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Rops8g02951 Pkinase 2.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02951 - - gmx:100818913 668.692