Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02919 ATGGAGCTGGCTTTGAGCTTAGGTGACACACCCAAACCCTTCTCTTTGCTTGACAACCCAACAAAATTACCCAACAAAGATTCAGTGCGTTTCTCTATAGCACTTGATGAAGCTGGTTTCTCTGGAAATTCCTCAGATGAAAGAAGGGCTTCTTCAGATCCACCTATTCAGCTTGACCTTCTTCCTTCAACACCGGTTCTTCGATCCAAGCCACCTTCACATCTTCCAATTCCATGGCTCAAAGATGCACTGGGTATGGAACGTGTCACATCAGAGACACCGGTGAAGGTGTTGGATGTGAACCGATTCCCGTTTCCGGCGGTGGAAGACACCGACGACGGTGCTTCACTTTCATCACCCAACAGTGCTGTTTCATCATTTCAAATGGATTTCTGTATTATGAACAATAATGCAGGAAGAAACCGAAGAGAGAACGAGCGTGAAGGTGCTGAAAGAGGTAGCGATGATGAAGAAAATGCCTCGGCTAGAAAGAAACTAAGACTCTCTAAAGAACAATCAGTTTTCCTTGAAGAGAGCTTCAAAGAACACACCACTCTCAATCCAAAACAAAAGCTTGCCCTTGCAAAACAGTTAAATCTTCGTCCTCGTCAAGTAGAAGTTTGGTTTCAAAACAGAAGGGCAAGGACAAAGTTGAAGCAAACTGAAGTGGATTGTGAGTACTTAAAGAGATGTTGTGAGACTTTAACTGAAGAGAATAGGAGGTTGCAAAAGGAACTGCAAGAACTGAGGGCTTTGAAAACTTCTCAACCATTCTACATGCAACTTCCAGCTACTACACTCACCATGTGTCCCTCTTGTGAAAGGGTAGCCACTAACACCACCACAACAACCGCGGCCAACCAAACTACCTCCGCCGCCAACAACAATAATAACAATGGTTCTCAAATCCCTGCAGTGCTGTCTCTTGGCAAACCCAGAATAGTGCCCTTACCTAATGGTCAAGCCCACCAGCAGCAACAGGCCCATCAAATTGCTTCATGA 1002 0.4501 MELALSLGDTPKPFSLLDNPTKLPNKDSVRFSIALDEAGFSGNSSDERRASSDPPIQLDLLPSTPVLRSKPPSHLPIPWLKDALGMERVTSETPVKVLDVNRFPFPAVEDTDDGASLSSPNSAVSSFQMDFCIMNNNAGRNRRENEREGAERGSDDEENASARKKLRLSKEQSVFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNTTTTTAANQTTSAANNNNNNGSQIPAVLSLGKPRIVPLPNGQAHQQQQAHQIAS* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02919 333 ProSitePatterns 'Homeobox' domain signature. 194 217 IPR017970 GO:0000981|GO:0006355
Rops8g02919 333 MobiDBLite consensus disorder prediction 319 333 - -
Rops8g02919 333 Gene3D - 167 217 - -
Rops8g02919 333 MobiDBLite consensus disorder prediction 140 165 - -
Rops8g02919 333 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 38 297 - -
Rops8g02919 333 Pfam Homeodomain 163 217 IPR001356 GO:0003677
Rops8g02919 333 SUPERFAMILY Homeodomain-like 159 220 IPR009057 -
Rops8g02919 333 MobiDBLite consensus disorder prediction 138 165 - -
Rops8g02919 333 SMART HOX_1 161 223 IPR001356 GO:0003677
Rops8g02919 333 FunFam Homeobox-leucine zipper protein 18 148 224 - -
Rops8g02919 333 Pfam Homeobox associated leucine zipper 219 253 IPR003106 GO:0006355|GO:0043565
Rops8g02919 333 ProSiteProfiles 'Homeobox' domain profile. 159 219 IPR001356 GO:0003677
Rops8g02919 333 MobiDBLite consensus disorder prediction 314 333 - -
Rops8g02919 333 Coils Coil 225 255 - -
Rops8g02919 333 Pfam HD-ZIP protein N terminus 56 127 IPR006712 GO:0005634
Rops8g02919 333 CDD homeodomain 163 220 IPR001356 GO:0003677
Rops8g02919 333 SMART halz 219 262 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02919 Rops-Chr8 65381632 65383366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02919 95 275 Homeobox Transcription Factor Family AT3G60390 63.317 2.00e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops8g02919 HD-ZIP_N 2.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02919 K09338 - gmx:100776113 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02919 8 65381632 65383366 Rops8g02919 8 65381632 65383366 ECH
Rops8g02919 8 65381632 65383366 Rops6g00704 6 18007983 18009952 PCT