Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02918 ATGGGGGAAGAGAATTCCGATGCAATGAACCTTGATTTGAATCTGGGTCCAGGCCCAGAGCCTGCAAATGGGTCCATGACTGATGAAGCTATGAACTTGGACGATTGGATTGGGGAACCTTTTCAGAGAATTAGCGAAGCTGTGAGGCTTAGACGACAACGGTGGAGATGGCGGCATCTTCCTATTCCTCCTCCTGAAGTTCATGTTCACATTCCACCTGAAACCATACAGCATTTTCATTTCCCACCTGAAGCACACAATATTTCAATGGAATTGAACCAGTTTTTGGTAAATTCTGGTAATGGAAGCGCTATACAGGCTGGGGAAGGAAGTGTGGCGGCCGAGGAGAGAAGGGAGGAGGCGCCAAAAGCGTGTGAGAACAACAATGGTGTTACGGAGGATGAGACATCACAGAAGAAGGATGATGTGGAAAAGGGTAGTGGTAATGATGGGGACTTCTTTGATTGTAATATATGTTTGGACCTGGCTAGGGAACCTGTTGTGACTTGTTGTGGTCATTTGTTTTGTTGGCCGTGCCTATATCGATGGCTGCATCTGCATTCCGAAGCTAAGGAATGTCCGGTTTGCAAGGGAGAGGTGACTCTTAAGAGTGTTACCCCAATATATGGCCGTGGAAACAATGTCCGTGGTCCTGAGGAGGATTCCACTCTTAAAATCCCTACTAGGCCGCAAGCAAGGCGTGTTGAGAGCCTGAGACAAACCATTCAGAGAAATACATTTGCACTCCCTGTGGAAGAGATGATTCGCCGTCTTGGAAGCAGAATTGATCTTTCTAGGGATATAGTTCAGCCACATGAACCAGACAACAATGCTCGTGAGTCAGCAGAGAGAACTACTTCCTTGCTAAGCAGGTTTTTGACATCTCGAGGCATGCGGAGAGAGCAGAATGCTGCAGCACCCCAAGATGATGTAGTTGGTATGACACAGAACAATGTTGGTGGTAGTCCTCCTGAGGTAGGGGATAACCGCAGGGTGCAATCCCTTTTGCTTAGAAGATCACAATCACATAGGGCAACACTTTCTAGTCTTTCATCAGCACTGACTTCTGCTGAAAGGTTAGTTGAGGCATATTTCCGTAGCCATCCATCAAATAGAAACCAAGAACAACCTCCTCCAGTTGATGACAGAGATTCCTTTTCAAGCATTGGTGCTGTCATAAATTCAGAGAGTCAAGTGGACACTGCTGTAGAAATTGATTCCATGGTATCCTTGTCGACATCTTCCTCTAGGAGGAGAAATGATGCTTCAAGAGTGTCTGATGTGGATAGTGGAGATTCTCGTGCGCCAAGGCGCAGACGTTTGAATTGA 1329 0.4658 MGEENSDAMNLDLNLGPGPEPANGSMTDEAMNLDDWIGEPFQRISEAVRLRRQRWRWRHLPIPPPEVHVHIPPETIQHFHFPPEAHNISMELNQFLVNSGNGSAIQAGEGSVAAEERREEAPKACENNNGVTEDETSQKKDDVEKGSGNDGDFFDCNICLDLAREPVVTCCGHLFCWPCLYRWLHLHSEAKECPVCKGEVTLKSVTPIYGRGNNVRGPEEDSTLKIPTRPQARRVESLRQTIQRNTFALPVEEMIRRLGSRIDLSRDIVQPHEPDNNARESAERTTSLLSRFLTSRGMRREQNAAAPQDDVVGMTQNNVGGSPPEVGDNRRVQSLLLRRSQSHRATLSSLSSALTSAERLVEAYFRSHPSNRNQEQPPPVDDRDSFSSIGAVINSESQVDTAVEIDSMVSLSTSSSRRRNDASRVSDVDSGDSRAPRRRRLN* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02918 442 Pfam Zinc finger, C3HC4 type (RING finger) 156 196 - -
Rops8g02918 442 MobiDBLite consensus disorder prediction 420 442 - -
Rops8g02918 442 CDD RING-HC_AtRMA-like 154 197 - -
Rops8g02918 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 214 IPR013083 -
Rops8g02918 442 MobiDBLite consensus disorder prediction 366 386 - -
Rops8g02918 442 MobiDBLite consensus disorder prediction 107 146 - -
Rops8g02918 442 ProSiteProfiles Zinc finger RING-type profile. 156 197 IPR001841 -
Rops8g02918 442 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 120 325 IPR045103 GO:0005783|GO:0006511|GO:0061630
Rops8g02918 442 ProSitePatterns Zinc finger RING-type signature. 171 180 IPR017907 -
Rops8g02918 442 MobiDBLite consensus disorder prediction 1 21 - -
Rops8g02918 442 FunFam E3 ubiquitin-protein ligase RMA3 124 245 - -
Rops8g02918 442 SMART ring_2 156 196 IPR001841 -
Rops8g02918 442 MobiDBLite consensus disorder prediction 409 442 - -
Rops8g02918 442 SUPERFAMILY RING/U-box 151 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02918 Rops-Chr8 65353068 65355957 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02918 1 433 C3H Transcription Factor Family AT3G58030 55.066 8.65e-143 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02918 K10666 - gmx:100811099 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02918 8 65353068 65355957 Rops8g02918 8 65353068 65355957 ECH