Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02894 ATGGATACCCGAAAGAGGGGAAGACCTGAACACGGATTCAACATAAATGGAGGACTCAAGAAAACCAAGCAAGAAATGGAGTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTTCTGGCTGCCCATTTGGTGAGAGCTGCCACTTCTTGCACTATGTTCATGGTGGTTATAATGCTGTTGCCCAGATGATGAATCTAACACCTGCAGCTCCTCCAGCATCTAGAAATGTTGCAGCCCCACCACCTGTTCCTAATGGGTCCACACCATCTGCCGTTAAAACCCGCTTATGCAACAAGTATAATACTGCTGAAGGTTGCAAATTTGGTGACAAATGCCATTTTGCCCACGGTGAATGGGAACTTGGCAAGCCTATTGCTCCATCGTTTGATGACCACCGTGCCATGGGACCCCCTGCAGCAGGTCGAATTGCTGGTCGGATGGAACCTCCTCCTGGTCCGGCTGCCAGCTTTGGTGCCAATGCCACTGCCAAGATTAGTGTAGAAGCATCCCTGGCTGGAGCAATCATTGGGAAGGGTGGTGTGAACTCAAAGCAGATCTGTCGCCAAACTGGAGCCAAACTTTCAATTCGAGAGCATGAATCTGATCCAAATCTTAGGAACATTGAACTTGAGGGAAGTTTTGAGCAAATTAAGGAAGCAAGTAACATGGTAAAGGATTTACTGTTTACCCTGCAAATGTCTGCACCACCTAAAACAGCCCCAGGTGTTCCTGGTGCCCACGCACACCATGGAAGCAACTTTAAGACGAAGCTGTGCGAGAATTTTGCAAAAGGATCTTGCACTTTTGGAGAAAGATGTCACTTTGCACATGGAGCTGCTGAATTGCGTAAATGA 876 0.4737 MDTRKRGRPEHGFNINGGLKKTKQEMELSTGVGSKSKPCTKFFSTSGCPFGESCHFLHYVHGGYNAVAQMMNLTPAAPPASRNVAAPPPVPNGSTPSAVKTRLCNKYNTAEGCKFGDKCHFAHGEWELGKPIAPSFDDHRAMGPPAAGRIAGRMEPPPGPAASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEASNMVKDLLFTLQMSAPPKTAPGVPGAHAHHGSNFKTKLCENFAKGSCTFGERCHFAHGAAELRK* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02894 291 SMART kh_6 166 236 IPR004087 GO:0003676
Rops8g02894 291 Gene3D - 92 130 - -
Rops8g02894 291 Gene3D - 257 291 - -
Rops8g02894 291 FunFam Zinc finger CCCH domain-containing protein 255 291 - -
Rops8g02894 291 Pfam KH domain 170 232 IPR004088 GO:0003723
Rops8g02894 291 SMART c3hfinal6 98 125 IPR000571 GO:0046872
Rops8g02894 291 SMART c3hfinal6 260 286 IPR000571 GO:0046872
Rops8g02894 291 SMART c3hfinal6 33 60 IPR000571 GO:0046872
Rops8g02894 291 Gene3D K Homology domain, type 1 163 256 IPR036612 GO:0003723
Rops8g02894 291 SUPERFAMILY CCCH zinc finger 34 60 IPR036855 GO:0046872
Rops8g02894 291 ProSiteProfiles Type-1 KH domain profile. 167 231 - -
Rops8g02894 291 ProSiteProfiles Zinc finger C3H1-type profile. 260 287 IPR000571 GO:0046872
Rops8g02894 291 CDD KH-I_AtC3H36_like 170 235 - -
Rops8g02894 291 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872
Rops8g02894 291 Pfam RNA-binding, Nab2-type zinc finger 38 58 - -
Rops8g02894 291 SUPERFAMILY CCCH zinc finger 259 290 IPR036855 GO:0046872
Rops8g02894 291 ProSiteProfiles Zinc finger C3H1-type profile. 33 61 IPR000571 GO:0046872
Rops8g02894 291 PANTHER CCCH ZINC FINGER/TIS11-RELATED 29 158 IPR045877 GO:0003729
Rops8g02894 291 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 261 285 IPR000571 GO:0046872
Rops8g02894 291 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 125 IPR000571 GO:0046872
Rops8g02894 291 SUPERFAMILY CCCH zinc finger 96 129 IPR036855 GO:0046872
Rops8g02894 291 FunFam Zinc finger CCCH domain-containing protein 93 130 - -
Rops8g02894 291 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 157 239 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02894 Rops-Chr8 65006445 65009956 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops8g02894 KH_1 3.5e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02894 - - gmx:100803981 551.977