Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02890 ATGAGGTGGTTTAAGGTTATTCGTCGATGGAGCCCTGAAGATATCCCGTCATCTCGTTTTGTCTGGCTTAGGTTCGAAGGGGTTCCAATCCACGCATGGGGGGAAGACTTCTTTAGATTGATGGTTGCTGATTTTGGAATGTTCATTACTCTCGATCCGCAAACTGATAGAAAGGAAAGGTTGGACTTGGCAAGGGTTCTGATCCAAACTTCTCACTGGGAGTTCTTGAACCATAACCTTAGTGCTCTTGTTAATGGTGTCAGCTTTAACATTAGGTTTGTTGAAGAGACTCATGAGTACCCCACGGTGGGTGGTCTGTTTAGCTCCAGCTGGGACCCAAACGGATCATCTTCATCAGAAGGGTCATCAGAAGGTGAAGTTGATACATTACTGGAGTATTCAGATGCCAGAGTTTTGGAGTATCCCTCTTCCGGTCCGGAGTCACAGAAGGAGAAGGAGTTGTTGTTCCACTCCCATGTGGCTAGCTCTCAAAAGTCGAAAGGGTGTCCTGCCTTGGTCGGAGCCTTGTCGGGGTATAACTCTGACTCACAATTACTTTGTAAAAGTAAGTTCGTCAGGCAAGCATGTTTGGGGGTCTCTGAAGCTTTGGTCGTAAACGCGCAACTTGGGAATCATGGGTGTTGTGGTAAGCACGTGATTGACTTTGTGGGTTTGCATGGTCAACAAAAATTGCTTCAAACTAGTGCAAGGGTTGGTGGCCAACTTGCTTCTCACGACCTTTTGGAGATGCAACAAACATGCTCGGGTTTGGGTGTGAATCTTCAAGGTGGGGGACAAAGTCTTGTTGATCCACTTGAAAAGGACGCTGGGGTCTTTAAACTAGAGAAGGTGGAAGTGGGGTCGCATGAACACGTGAAAAGCAATCTGGCCAAGGGACATTCGTCTATGGGTGCTTCTGATTCTTTGGGTGTTTGTCCTCAATATGGGGGCCACGTGGGGCTCACATCGAGTGACCCTAAGCTGGGAGGCCTACGTGGCAGAGAGGAAACGCTAGGCCCACGTCCAGCTTCCATTATTGAGAAGGATTGTTTGACTGTATCAGATCTTTGTACCCAATCGCGCATGATCCCTATTGCTCCTCTATCTCTAGAGGCCGCCACTTTGGATCCAGTTGTTGTTGCGAGCTCCAAACATAGGGATAATATTGCGGGGTCGGGGCCAGTCAGGAGGAAAAAGGCAGCTCAACAGGAGTGTGTTTCTGATGAAGGCAGTAAGTCTCTGGATCAACAACAGCCACTAGGAGCTTTACAGCCAGTAGAAGGAGTTGCCTGTTCAGTGGCATCAGCGAAGAACTTTCAGCTGGTTGCTACTGTGGACCAAAGCCAACCAGGAGGGAAAGGAGATGAAGAAACGGTTCTCCTCCAATTTGGTAAAGTAGGGGATGATCAACTTTTACCAAAGATGCATACTTGTAGATTTGTTTCTTCATATGGAAGTCATACACTACAATAG 1473 0.4759 MRWFKVIRRWSPEDIPSSRFVWLRFEGVPIHAWGEDFFRLMVADFGMFITLDPQTDRKERLDLARVLIQTSHWEFLNHNLSALVNGVSFNIRFVEETHEYPTVGGLFSSSWDPNGSSSSEGSSEGEVDTLLEYSDARVLEYPSSGPESQKEKELLFHSHVASSQKSKGCPALVGALSGYNSDSQLLCKSKFVRQACLGVSEALVVNAQLGNHGCCGKHVIDFVGLHGQQKLLQTSARVGGQLASHDLLEMQQTCSGLGVNLQGGGQSLVDPLEKDAGVFKLEKVEVGSHEHVKSNLAKGHSSMGASDSLGVCPQYGGHVGLTSSDPKLGGLRGREETLGPRPASIIEKDCLTVSDLCTQSRMIPIAPLSLEAATLDPVVVASSKHRDNIAGSGPVRRKKAAQQECVSDEGSKSLDQQQPLGALQPVEGVACSVASAKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDQLLPKMHTCRFVSSYGSHTLQ* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02890 490 Pfam Domain of unknown function (DUF4283) 6 68 IPR025558 -
Rops8g02890 490 Pfam Tub family 432 470 IPR000007 -
Rops8g02890 490 SUPERFAMILY Tubby C-terminal domain-like 433 470 IPR025659 -
Rops8g02890 490 Gene3D Tubby Protein; Chain A 428 476 IPR025659 -
Rops8g02890 490 PANTHER DUF4283 DOMAIN PROTEIN 3 131 - -
Rops8g02890 490 MobiDBLite consensus disorder prediction 386 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02890 Rops-Chr8 64854977 64857153 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02890 432 471 TUB Transcription Factor Family AT1G53320 87.500 6.98e-15 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Rops8g02890 DUF4283 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02890 K19600 - tpra:123896113 95.5153