Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02887 ATGAACAAGAACAAGGTTGATTACCAAGGACTGCTTCAACAAAGTCATGGACTAAATGGAGATTTTAATTCTGAGTTTGGCAATTATTCTTGTCAATATTTTGATATCAAACAGGCTTGGAATATAGGAACATGCAATCAGCCACTTGCCATGGAGGGAGGAACAGAACAATTGTCATACATAGGCCCTGGCAAATCATCTAGCACAATTATGAGCCGTTTTGAGTCACCAGTTTCTGCCTTTTATGCAGCAGAACACTGCATGGGTTTTGCAGAATATGATAGCCAAGTTTGTAATCACTCTTTGAGCTCTCAGTTACATAAGATTCATGATTTGGAATTCCCTTTGTATCAATCTTCTGGGGAAAACCCTTTCTTGGATTCAGCAAACCAACATGACCCCAACTTTGAATTGTCAAACACTTTGCAAGCAATGGTGAAATCTCAAATGAATAGTAATCAATACCTCAGATCCCTAGAAAAATCCAATAAAATTTCATGTGGGAATTTTCCGGGTACCAAGTTTCTTTCAATTGAACAACAAAAGTTGTCAATTGATGGTATTGCCTCAATTAAGAGGAGCTCATCAACTCCTAATAAAGGAAATCAGGATCATATGGTTGCTTGTGGATCTTATATTTTACCTGTTTCCCAGCTGAGCTTCTCTTCTCAGCATGAGAAGTTGTCTCCAAAATTTTCAGCAGGAAGTGTGACAACTACTTTTGGAAACTCTGCTTCTAATGGGACAATAGTCTCAAGCAAAACACGTATAAGATGGACTAAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGTGGTGCTGAGAAGGCAACACCTAAAGCTATATTAAGGATGATGGATTCAGATGGTTTGACAATCTTCCATGTCAAAAGTCATTTGCAGAAATATAGAATTGCAAAATTCATGCCAGAGCCAGCTCAAGGGAAATCTGACAAAAGAATCCATACAGAGGATGTGCATCATCTTGGTGCCAAAACTGGCTTGCAAATTAGAGAGGCACTTCAGCTACAATTAGATGCTCAAAGGCGTCTTCATGAACAGCTAGAGATTCAAAGAACTTTACAGTTGCGAATTGAGGAACAAAGCAGGCAGCTGAAAAAAATGTTTGACCACCAGCAGAAGACATGTAATAACCTCTTGGATAATCGGAATACAACAACTAATCATAAAGATTGA 1206 0.3864 MNKNKVDYQGLLQQSHGLNGDFNSEFGNYSCQYFDIKQAWNIGTCNQPLAMEGGTEQLSYIGPGKSSSTIMSRFESPVSAFYAAEHCMGFAEYDSQVCNHSLSSQLHKIHDLEFPLYQSSGENPFLDSANQHDPNFELSNTLQAMVKSQMNSNQYLRSLEKSNKISCGNFPGTKFLSIEQQKLSIDGIASIKRSSSTPNKGNQDHMVACGSYILPVSQLSFSSQHEKLSPKFSAGSVTTTFGNSASNGTIVSSKTRIRWTKDLHEKFVECVNRLGGAEKATPKAILRMMDSDGLTIFHVKSHLQKYRIAKFMPEPAQGKSDKRIHTEDVHHLGAKTGLQIREALQLQLDAQRRLHEQLEIQRTLQLRIEEQSRQLKKMFDHQQKTCNNLLDNRNTTTNHKD* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02887 401 Pfam Myb-like DNA-binding domain 258 307 IPR001005 -
Rops8g02887 401 Gene3D - 253 312 - -
Rops8g02887 401 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 253 311 IPR017930 -
Rops8g02887 401 Coils Coil 341 361 - -
Rops8g02887 401 Pfam MYB-CC type transfactor, LHEQLE motif 338 385 IPR025756 -
Rops8g02887 401 SUPERFAMILY Homeodomain-like 252 308 IPR009057 -
Rops8g02887 401 NCBIfam myb-like DNA-binding domain, SHAQKYF class 254 309 IPR006447 GO:0003677
Rops8g02887 401 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 241 392 IPR044848 GO:0003700
Rops8g02887 401 FunFam Myb family transcription factor 253 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02887 Rops-Chr8 64821065 64823730 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02887 237 382 G2-like Transcription Factor Family AT4G28610 56.757 1.15e-47 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops8g02887 Myb_DNA-binding 1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02887 - - gmx:100527766 546.199