Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02885 ATGGAGGATTTGAAGAAGAGAAAGCTAGAAGAAGATGGTGCAGGCAACGGTGATTTTACTTCCAAGGAAGAGATTCGCCTTCTCATCGAACCTCTCGCCAAACCTCAACTCGTTGATCTTCTCGCTAAACTAGGGTCCCAATATCCTTCAATTGCAGAAGAAATAAAAAGTATTGCAAGTGCAGATCCTGTCCATCGAAAGCTTTTTGTTCGTGGCTTGGCCTGGAATACCTCCTCAGAAACTTTGCGTGCTGCATTTCTAGAGCACGGAGAAATTGAGGAAGGGGCTGTGATCTATGATAAAGCGACAGGAAAATCCCGTGGCTATGGATTTATCACTTACAAAAATATGGAATCAACTCAGCAAGCATTGAGAGCACCTAGCAAGTTAATTGATGGAAGATTGGCTGTCTGTAATCTAGCTTGTGAGGGCTTAAGCGGAACAAGTAGTGCTCCTGATCTTACCCTGAGGAAGCTTTATATTGGAAGCTTATCGCCAGAAGTCACAAGTGAAATGCTGCTTAGCTTCTTTGGGAGCCACGGTGAAATAGAGGAAGGTTCAGTTGCATATGACAAGGATACAAATGAATCACGTGGTTTTGGCTTTGTTACGTACAAGACAGCTGAGGCTGCAAAGAAGGCCATAGATGACCCAGAAAAGACTCTTGGGGGGAGGAATATAATTGTAAAATATGCTGATTCCCACAAGGGTAAAACTGGTCAGCCGCAATTTCCTGCAGGAGGAGTTCCAATGGCAGCCTTACCTATGACCCCAGGATATGTGCAACCTGGAAAAGCTCATATTAATTCTGGTCCCCCAGTGGGTTACACTTACCCCCAAACTGTAGCACCATACCCTACAGCTCCTTATCAAAGCCCTAACATGGCACCCTCTCCTTATCCAACACAAGGGCAGGTTCCTTATCCTCCAGTTTCTGCGAAGAAAGAGCAACCTGGGCTCCCTCCGACTCAACCCTTGGGAATGAACAACTACCCTTATTACTATCCCAAGCAATGA 1017 0.4543 MEDLKKRKLEEDGAGNGDFTSKEEIRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETLRAAFLEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQQALRAPSKLIDGRLAVCNLACEGLSGTSSAPDLTLRKLYIGSLSPEVTSEMLLSFFGSHGEIEEGSVAYDKDTNESRGFGFVTYKTAEAAKKAIDDPEKTLGGRNIIVKYADSHKGKTGQPQFPAGGVPMAALPMTPGYVQPGKAHINSGPPVGYTYPQTVAPYPTAPYQSPNMAPSPYPTQGQVPYPPVSAKKEQPGLPPTQPLGMNNYPYYYPKQ* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02885 338 MobiDBLite consensus disorder prediction 290 306 - -
Rops8g02885 338 Gene3D - 145 249 IPR012677 -
Rops8g02885 338 FunFam UBP1-associated protein 2C 144 242 - -
Rops8g02885 338 CDD RRM2_NsCP33_like 158 232 - -
Rops8g02885 338 PANTHER GEO13361P1-RELATED 49 144 - -
Rops8g02885 338 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 157 234 IPR000504 GO:0003723
Rops8g02885 338 SMART rrm1_1 67 139 IPR000504 GO:0003723
Rops8g02885 338 SMART rrm1_1 158 230 IPR000504 GO:0003723
Rops8g02885 338 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 159 227 IPR000504 GO:0003723
Rops8g02885 338 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 134 IPR000504 GO:0003723
Rops8g02885 338 MobiDBLite consensus disorder prediction 289 338 - -
Rops8g02885 338 Gene3D - 57 144 IPR012677 -
Rops8g02885 338 SUPERFAMILY RNA-binding domain, RBD 60 143 IPR035979 GO:0003676
Rops8g02885 338 FunFam UBP1-associated protein 2C-like 62 143 - -
Rops8g02885 338 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 134 IPR000504 GO:0003723
Rops8g02885 338 SUPERFAMILY RNA-binding domain, RBD 152 249 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02885 Rops-Chr8 64800814 64804804 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02885 149 268 C2H2 Transcription Factor Family AT2G19380 33.858 1.17e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02885 K12741 - gmx:100776344 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02885 8 64800814 64804804 Rops8g02885 8 64800814 64804804 ECH