Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02884 ATGATCGACTTACGAAAACTCAGATCAACATTGATATTTTCCAATGTTGCCCAAAACCACTTCAGGCTTAAACCCCCAGAAAACCCTAGATTTCAGAGCACCAAAAGAACACTTCAATCGAAGGGTTTCGAAGAGAAACTCCCTGGGAAATCCATCATGAGAGAAGCCCAAGCTGCATTACTTGATTATCTGCATTTAACGAGGAGCTTGCAGTTCTTAGACGCAGACAACATGTGCAAAAACTCACCTTTTTTCCTTCACGACCTTCTCAAGAAAACCCAAAAGCCCTTAAGGGACAAGAACACGAAGCATTCCATTTCTCGCTACCTTCGTTACCACCCCATCAACGAGTTCGAACCCTTTTTCGAGAGCGTTGGTTTGAAGCCCTCAGAATATTCACCCCATCTTCCACGTGACATGATTTTCCTCAATGATGACCCTTTGTTGATGGAGAATTATCACACTCTTTGTAACTATGGTGTTCCACGCACCAAGATGGGGAAGATTTTCAAGCAAGCGCCACAGGTTTTTCGCTACGAGAGTGGTGTATTGAGCTCAAAGATTAAGGCTTATGAGAACATGGGTGTTGCACCTTCCACTTTAGTGGATGTTATTGCTTTTAGCCCCTCCCTTTTGGTTGGGGATGTTAACCTTGATTTTGTTAAGGTTGTGGAGATGTTGAAGCATCTTGATCTTGTTGCAAATATTGGTGATTGGATTGAGGAGCATTTGTTGGATGTGGGTTATTGTAATTGGGGCATGATGCGTGAGCTATTGTGCTTGCTTGCCAAGTTTCACAGTAAGGAACATTTGGCTGATATCATTTGCCAACACCCTTGTGTTGTTTTTGAGGAATCAGGAGGTAGGACTCTCTCCCTGATTGCCTTCTTGATCAAATTTGGATTGTCTATGAACCAAATTGCTCTCATGTTTCTTGAGTTTCCGCAGATTCAGGTTGCCAAGTTCTTTGCCAACTTGATGCACTGTTTCAAATTCCTCACTGAAATTGAGATGCAAGCTGAAGAGATTGGAAAAATTTTCCAGTCTCACTCCTTGCTGCTTGGTTCCTTCACTCTGAAGAAAACAAAGAGTTTGCTTGGTGTCTTGAATGTTGGCAAGAAAAGGCTTTGTAGAATGGTGCAGGATAATCCTCAAGAAATGAAGAATTGGGCTCTGGGAATAAAACTCCAGCCTTTGGTGAGTTGCTTAAAGGAAGAAGAGCAGAAATCAAAGGCGAAGAAGAAAGAGTTCTTGCTGAGCTTGGGATATGTGGAAAACTCGGAAAAAATGGAAGAAGCGTTTAAGGTGTTCAGAGGTAAGGGAGCTGAGCTTAAGGAAAGATTCGATTTTATTGTTAAAGCTGGTTTGAATAGTGAGACTGTTCATAAAATGATTAGAGTTTCCCCTCAGATTCTTAATCAGAACACAGATAGGATCAACATGAAAATTGAGTATCTTTTAAATGAAGGATATTCTATATCAGATTTAGTGAGTTTCCCATCTTTTCTTTCCTATACACCTAGAAGAGTTAAGCTTAGGTTATCAATGTATAAGTGGCTCAAAGACCATGAGGCTGTGGATCCAGGGCTTGCTTTGAGCACTATAATTGCATGCTCAGAGAAAATATTTGTACGGCATTATGTAAGTCGTCATCCATCTGGCTTTCAAGTTTGGAAGGATTTAAAGAAAGAATTTTATCCTGAGGATTAA 1710 0.4082 MIDLRKLRSTLIFSNVAQNHFRLKPPENPRFQSTKRTLQSKGFEEKLPGKSIMREAQAALLDYLHLTRSLQFLDADNMCKNSPFFLHDLLKKTQKPLRDKNTKHSISRYLRYHPINEFEPFFESVGLKPSEYSPHLPRDMIFLNDDPLLMENYHTLCNYGVPRTKMGKIFKQAPQVFRYESGVLSSKIKAYENMGVAPSTLVDVIAFSPSLLVGDVNLDFVKVVEMLKHLDLVANIGDWIEEHLLDVGYCNWGMMRELLCLLAKFHSKEHLADIICQHPCVVFEESGGRTLSLIAFLIKFGLSMNQIALMFLEFPQIQVAKFFANLMHCFKFLTEIEMQAEEIGKIFQSHSLLLGSFTLKKTKSLLGVLNVGKKRLCRMVQDNPQEMKNWALGIKLQPLVSCLKEEEQKSKAKKKEFLLSLGYVENSEKMEEAFKVFRGKGAELKERFDFIVKAGLNSETVHKMIRVSPQILNQNTDRINMKIEYLLNEGYSISDLVSFPSFLSYTPRRVKLRLSMYKWLKDHEAVDPGLALSTIIACSEKIFVRHYVSRHPSGFQVWKDLKKEFYPED* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02884 569 Gene3D Transcription termination factor 3, mitochondrial 146 288 IPR038538 -
Rops8g02884 569 Gene3D Transcription termination factor 3, mitochondrial 289 561 IPR038538 -
Rops8g02884 569 PANTHER CGI-12 PROTEIN-RELATED 263 551 IPR003690 GO:0003690|GO:0006355
Rops8g02884 569 SMART mt_12 308 339 IPR003690 GO:0003690|GO:0006355
Rops8g02884 569 SMART mt_12 167 197 IPR003690 GO:0003690|GO:0006355
Rops8g02884 569 SMART mt_12 272 303 IPR003690 GO:0003690|GO:0006355
Rops8g02884 569 SMART mt_12 202 233 IPR003690 GO:0003690|GO:0006355
Rops8g02884 569 SMART mt_12 462 492 IPR003690 GO:0003690|GO:0006355
Rops8g02884 569 SMART mt_12 493 526 IPR003690 GO:0003690|GO:0006355
Rops8g02884 569 Pfam mTERF 408 543 IPR003690 GO:0003690|GO:0006355
Rops8g02884 569 Pfam mTERF 268 421 IPR003690 GO:0003690|GO:0006355
Rops8g02884 569 FunFam Transcription termination factor MTEF18, mitochondrial 293 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02884 Rops-Chr8 64798338 64800047 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Rops8g02884 mTERF 6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02884 - - lja:Lj1g3v4317450.1 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02884 8 64798338 64800047 Rops8g02884 8 64798338 64800047 ECH