Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02881 ATGGACTATAGCCACCACCACAACACAGTACTAATGGGTTCAGGCACTGCCACTAAACAACCCTCCTCACCACCCAACTCTTCTTCTGAGTCCCTCAATGGTTTGAAATTTGGCCAAAGAATCTATTTTGAGGATGTGGGTCTCTCTACTCCTGCCACCTCAGTTGCCACTGGTGCTGGTTCTTCTTCCTCTTCCTCTTCCTCTTCATCTTCATCTTCTGGTCCAAAGAAGGGAAGAGGTGGGTCTGTTCAGGCTTCTCATCCTCCAAGGTGTCAAGTTGAAGGGTGCAAAGTAGATCTGAGTGATGCCAAAGCTTACTATTCTAGGCATAAAGTTTGTGGCATGCACTCTAAATCCCCTACAGTTATTGTTGCTGGTCTTCAACAAAGGTTTTGCCAACAGTGTAGCAGATTTCATCAACTTCCTGAGTTTGATCAAGGAAAAAGAAGTTGCCGCAGGCGATTAGCTGGTCATAATGAACGTCGTAGAAAGCCCCCACCCAGCTCCCTCTTAACCTCTCGATATGCCAGACTTTCTTCATCTATTTTTGATAATAGCAATAGAGGTGGCAGCTTTCTGATGGAATTTGCTTCATACCCGAAGCTCAGTCTGAGAAATTCACTTCCAACTCCTAGATCATCATCTGAGCTAGTTCCTGGAAATCAAACCACGACACTTAACTGGCATTGGCAGGGCAACTCGGAGACACCATCTGACCTTTTCTTGCAAGGTTCAGAGGGTGGAACAAGCTTCCCCAGTGCCAGACATCCTCCTCCAGAGGAAAGTTACAACACTGGAGTCACAGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAGTCAAACATGGGGTTCTAGAAACACAGCACCAAGTCTTGGGTTGAACAACATGTTTAATTTCAATGGAACACCCATGGCACAACTTGCTGCCACATCTTCTCATGGTGCAGCCATCCATCAACTTCCAAATACCTCTTGTTGTTTCAAGGGCATTGATTCAAATGAGGTTGTCCCTGATCTCGGTCTCGGTCAAATTTCGCAGCCTCTCAATGGCCAACTTCCTGGTGTGCTTGATCTGTCTCAAGATGGCAGGAGGCATTTTATGGATCTAGAACAGTCCAGGGCTTATGAATCTCCTCACTGGTCACTTTGA 1149 0.463 MDYSHHHNTVLMGSGTATKQPSSPPNSSSESLNGLKFGQRIYFEDVGLSTPATSVATGAGSSSSSSSSSSSSSGPKKGRGGSVQASHPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPTVIVAGLQQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPSSLLTSRYARLSSSIFDNSNRGGSFLMEFASYPKLSLRNSLPTPRSSSELVPGNQTTTLNWHWQGNSETPSDLFLQGSEGGTSFPSARHPPPEESYNTGVTDSSCALSLLSSQTWGSRNTAPSLGLNNMFNFNGTPMAQLAATSSHGAAIHQLPNTSCCFKGIDSNEVVPDLGLGQISQPLNGQLPGVLDLSQDGRRHFMDLEQSRAYESPHWSL* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02881 382 MobiDBLite consensus disorder prediction 53 79 - -
Rops8g02881 382 SUPERFAMILY SBT domain 89 170 IPR036893 GO:0003677|GO:0005634
Rops8g02881 382 MobiDBLite consensus disorder prediction 1 33 - -
Rops8g02881 382 MobiDBLite consensus disorder prediction 53 89 - -
Rops8g02881 382 FunFam Squamosa promoter-binding-like protein 14 82 152 - -
Rops8g02881 382 Gene3D - 81 152 IPR036893 GO:0003677|GO:0005634
Rops8g02881 382 MobiDBLite consensus disorder prediction 237 267 - -
Rops8g02881 382 MobiDBLite consensus disorder prediction 9 33 - -
Rops8g02881 382 ProSiteProfiles Zinc finger SBP-type profile. 88 165 IPR004333 GO:0003677
Rops8g02881 382 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 36 327 IPR044817 GO:0003677
Rops8g02881 382 Pfam SBP domain 91 164 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02881 Rops-Chr8 64761882 64766537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02881 35 382 SBP-box Gene Family AT2G42200 42.204 7.98e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Rops8g02881 SBP 1.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02881 - - gmx:100807165 557.37