Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02880 ATGCTCTCCTTTTCCCCTTCGGATGATATAGAGGTCTCTTCTACCGCGCTAGATGAGAGCCTGCAAATCCCAGCTTTTAATGCTGCATCCCTTTTGGGTCCAATGCTATCGCCTTCCCTGCACCATAACAATGTAGAGGAATCATCGAGAAGAAGTTTTTCCAGAAGAGGCAGATCCACTGGAAGGACGAAAATTTACACGGTAGCGGAGCTTCAGTTGGCTACTAACTACTTCAATGAAGTCAACCTTCTGGGAGAGGGATCTCTTGGCCCTGTTTACAGAGCTGAATTTCCCAATGGCAAAATTTTGGCCGTGAAGAATATAAACATGGCGGGCCTGTCTTCCAGAGAAGAGGAAGAGTTCTTGGATGTCATTTGCACGGCTTCCCGATTGAAGCACCCCAACATCGTAGCACTCAAAGGTTACTGTTTGGAGCGCGGAGAGCATCTTCTTGTTTACGATTACGTTGGAAATTTAACTCTAAACGATGCTCTTCACAGAGGGGCATGCAAACCTCTATCGTGGGTCCACCGTCTTCGAATCGCTCTAGGTGTTGCTCAGGCTTTGGACTATTTGCACTCAGCGTGCTGCCCCCCACTGGCCCATGGTAACTTGAAGGCTGCCAATGTTCTACTGGATGAAAATTTTATGCCTCGTGTTTCTGACAGTGGCTTGGCTATTTTGAGACCACTGAGGAGCAATCTAGTTAAAATTTCAGCTACGGAGATTAATATTGAAGAGAGAGGCTACTTTGCGCCTGACCATGGCCAACCAGGATCCAGCAGCAGAAGGAGAGACGTCTTTGCCTTTGGGGTTTTGCTTCTGGAACTGTTAACAGGAAGGAAACCTTTCGATGGTGCCAGACCAAGGGAGGAGCAATATCTGGTGAAATGTGCTTCACCCATGCTCCATTATAGCGCTTGTTTGGAACAGATAGTGGATCCCGGTATGAAAAGGACAATTTCATCCGAGGCTCTTTCCAGTTATGCTGATATCATCTCCCTCTGTATACAGCCTTTAAGGCAATGCCGTCCTCCAATGTCTGAAGTTGTGGACTCTCTAGTATCTTTTTCCCAGAAGTTCAACTTTGCCAAGACCGGTGTAGCAGATAGTACTGATTTTGATCTATTTGAGATGTCGTTCCGTTCAACCAACACACGCTTTATAGGTTCACCGGCATTGAGCCATGCATCAGCCTGA 1200 0.4692 MLSFSPSDDIEVSSTALDESLQIPAFNAASLLGPMLSPSLHHNNVEESSRRSFSRRGRSTGRTKIYTVAELQLATNYFNEVNLLGEGSLGPVYRAEFPNGKILAVKNINMAGLSSREEEEFLDVICTASRLKHPNIVALKGYCLERGEHLLVYDYVGNLTLNDALHRGACKPLSWVHRLRIALGVAQALDYLHSACCPPLAHGNLKAANVLLDENFMPRVSDSGLAILRPLRSNLVKISATEINIEERGYFAPDHGQPGSSSRRRDVFAFGVLLLELLTGRKPFDGARPREEQYLVKCASPMLHYSACLEQIVDPGMKRTISSEALSSYADIISLCIQPLRQCRPPMSEVVDSLVSFSQKFNFAKTGVADSTDFDLFEMSFRSTNTRFIGSPALSHASA* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02880 399 FunFam Leucine-rich repeat receptor-like protein kinase 156 365 - -
Rops8g02880 399 ProSiteProfiles Protein kinase domain profile. 78 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02880 399 SUPERFAMILY Protein kinase-like (PK-like) 53 354 IPR011009 -
Rops8g02880 399 Gene3D Transferase(Phosphotransferase) domain 1 157 377 - -
Rops8g02880 399 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 43 155 - -
Rops8g02880 399 Gene3D Phosphorylase Kinase; domain 1 40 155 - -
Rops8g02880 399 Pfam Protein tyrosine and serine/threonine kinase 82 354 IPR001245 GO:0004672|GO:0006468
Rops8g02880 399 PANTHER OS01G0253100 PROTEIN 49 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02880 Rops-Chr8 64754582 64756726 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02880 34 399 Strubbelig Receptor Gene Family AT5G06820 56.300 6.47e-128 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Rops8g02880 PK_Tyr_Ser-Thr 1.2e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02880 - - gmx:100775254 534.643