Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02876 ATGAGTCTCCAAAGCAACTTCCTATCTCTTTTGGTTCCCCTGGCTGCAATTTTTGCATCTTTGTATCTCATAAATCCAAATCCCCTCAACAATTTCACATACTTCAGTCTCACAACCTTGTCACCATCATCTATATACTTGGCATTACCTTTAACTTGGCACTTCCACAGAGACCATCATCATCATAGACCACACAAAAAACACCCTGACAGCGGGAATGCTAGTTCTATTTGTGATGATTTTCCACCAGGAATTCCACCTCCAAATACCAATACCACTTCATATCTTTGTGTTGATAGAAAAGGGTGTTGTAATTTCACAACGGTACAAGCAGCAGTTAATGCAGTTCCAGATTTTAGCTTAAAAAGAACCATAATATGGATTAACAGTGGCATTTACTATGAGAAAGTTATGGTGCCAAAAACCAAACCCAACATTACATTTCAAGGACAAGGGTATACTTCAACTGCAATTGCTTGGAATGATACTGCAAAGTCCGCGAATGGCACTTTTTATAGTGGCTCCGTACAAGTTTTCGCCTCCAATTTCATTGCAAAGAACATAAGCTTCATGAATTTAGCACCAATTCCAAATCCTGGTGCTGAAGGAGCACAAGCAGTAGCCATAAGAATATCAGGAGATCAAGCTGAATTCAGGGGTTGTGGATTCTTTGGAGCACAAGACACCCTTCATGATGATAAGGGTCGTCATTACTTCAAAGATTGCTATATCCAAGGCTCCATTGATTTCATATTCGGCAATGCAAGGTCACTCTATGAGAATTGTCAATTGGTTTCTATAGCGAATCCAGTACCTCTGGGACAAAAGAACATAAATGGTGCAGTTACAGCTCATGGTAGAGTTTCAATGGATGAAAATACAGGATTTGCATTTGTGAACAGTGCAATAGGAGGGAACGGTAGAATATGGTTGGGTCGGGCATGGAGGCCATATTCTCGTGTTGTTTTTGCCTTCACAGTAATGTCAGATATCATTGCCCCTGAAGGTTGGAATGATTTCAATGACCCTTCAAGAGACCAGACTATCTTCTATGGAGAATACAATTGCTCTGGACCAGGGGCTAATATGGCTTTGAGGGCATCATATGTACAGAGATTAAACGGTACAGAAGCTTTTCCATTCCTCAACGCAAGTTTTATTGACGAGTTGGAAGATGGAATGGGTGGTGACCTTGTTGCCAAAACTGGTTTCATGGTTGATGGTGGACCAAACATTGAAACTAGTGGCCCAAATGGAGTCTTTGAGTTGTGA 1272 0.4096 MSLQSNFLSLLVPLAAIFASLYLINPNPLNNFTYFSLTTLSPSSIYLALPLTWHFHRDHHHHRPHKKHPDSGNASSICDDFPPGIPPPNTNTTSYLCVDRKGCCNFTTVQAAVNAVPDFSLKRTIIWINSGIYYEKVMVPKTKPNITFQGQGYTSTAIAWNDTAKSANGTFYSGSVQVFASNFIAKNISFMNLAPIPNPGAEGAQAVAIRISGDQAEFRGCGFFGAQDTLHDDKGRHYFKDCYIQGSIDFIFGNARSLYENCQLVSIANPVPLGQKNINGAVTAHGRVSMDENTGFAFVNSAIGGNGRIWLGRAWRPYSRVVFAFTVMSDIIAPEGWNDFNDPSRDQTIFYGEYNCSGPGANMALRASYVQRLNGTEAFPFLNASFIDELEDGMGGDLVAKTGFMVDGGPNIETSGPNGVFEL* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02876 423 FunFam Pectinesterase 90 392 - -
Rops8g02876 423 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 84 389 - -
Rops8g02876 423 Pfam Pectinesterase 98 388 IPR000070 GO:0030599|GO:0042545
Rops8g02876 423 SUPERFAMILY Pectin lyase-like 95 388 IPR011050 -
Rops8g02876 423 ProSitePatterns Pectinesterase signature 2. 244 253 IPR033131 -
Rops8g02876 423 Gene3D - 89 395 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02876 Rops-Chr8 64722812 64730273 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02876 67 388 Carbohydrate Esterase AT1G05310 72.050 6.14e-180 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02876 - - gmx:100806629 684.871