Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02874 ATGGCTTCTAATGTTAAGAACACAAACCCACCAAGCACTCAACTTGAACCACTCCCTCCACCTCAACACCGTCGTCATCATCATCAGCTACAACAGCAACATCATCATCAAATACAAGACCCTCGAATTTCTTTTGGGATGATGCAATCTTCTTCATCATCCTCTATCTCTGGAAACTACCTAAGCAAGGATTATGGAGCTTATGATTTGGGTGATTTGGATCAAGCCCTTTTTCTCTATCTTGATGGACAAGTAGACCCATCAAATATTCAAGACCAAAGACAGAACTCATCATCAGGAATGAGGCCTCCAACTCTCAACATTTTCCCCTCTCAGCCTATGCACGTAGAGCCATCATCATCCAATTCCAAGGCTAGTATAGAGTTAGTTTCTCCGCAAACCAGTGGATCCAAGAGACCATCAGAGCCGTCCATGGAGTTGGCCCACCCAAGAAACCAAGCCGCCTCTGCGCCTGAACCACCCAAAGCTACTAAGCGAGAGAGCAATCGCAAGGATCCAACCTCAAGTTCTGAACAAGAAGGACCTAAAACACCAGATCCCAAGACACTCAGAAGACTTGCTCAGAATAGAGAGGCAGCTAGGAAAAGCAGGCTTAGGAAAAAAGCGTATGTTCAGCAGCTAGAGTCAAGTAGGATTAGGCTTAATCAGATGGAACAAGAGCTACAGCGAGCTAGGTCTCAAGGCATACTCTTTGGTGGGGGTGCACTTTTGGGAGGAGAGCAAGGCCTTCCTGTCACTATGAATAGCATTAGCTCAGAGGCTGCAATATTTGACGTGGAATATGCTAGATGGCTAGAGGAGCACCACCGCCTAGTGTGTGAGCTAAGAGCTGCAGTTCAAGAGCATCTTCCTGAGAACGATCTTAGACTATTTGTGGAAAATTGTTTGGCACATTATGACCAAGTAATGAACCTCAAGAGCTTAGTGGCAAAAACAGACGTATTCCATCTTGTATCTGGCATGTGGAAGACCCCAGCTGAACGTTGCTTCATGTGGATTGGTGGATTCAAGCCATCTGAACTCATTAAGATTATTCTAAGTCAAATTGAGCCTCTGACGGAACAACAAATACTGGGTATATGTGGATTGCAACAATCTACACAAGAGGCAGAAGAGGCTCTCTCTCAAGGGCTTGATGCTCTCAATCAATCTCTCTCAGAAACTATAACATCAGACTCTTTGAGTTATCCTCCCAATATGGCTAACTACATGGGACAGATGGCTATGGCCATGAACAAGCTCTCCACTCTTGAAGGTTTCGTGAGACAGGCAGATAATCTGCGGCACCAAACCATTCACCGTCTGCATCAGATCCTAACAACACGCCAAGCAGCAAGGTGTTTTCTGGCCATCGCCGAGTACTTCCATCGTCTGCGAGCTCTGAGTTCCCTGTGGTTGGCACGCCCTCGCCAAGAATAG 1440 0.4618 MASNVKNTNPPSTQLEPLPPPQHRRHHHQLQQQHHHQIQDPRISFGMMQSSSSSSISGNYLSKDYGAYDLGDLDQALFLYLDGQVDPSNIQDQRQNSSSGMRPPTLNIFPSQPMHVEPSSSNSKASIELVSPQTSGSKRPSEPSMELAHPRNQAASAPEPPKATKRESNRKDPTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLNQMEQELQRARSQGILFGGGALLGGEQGLPVTMNSISSEAAIFDVEYARWLEEHHRLVCELRAAVQEHLPENDLRLFVENCLAHYDQVMNLKSLVAKTDVFHLVSGMWKTPAERCFMWIGGFKPSELIKIILSQIEPLTEQQILGICGLQQSTQEAEEALSQGLDALNQSLSETITSDSLSYPPNMANYMGQMAMAMNKLSTLEGFVRQADNLRHQTIHRLHQILTTRQAARCFLAIAEYFHRLRALSSLWLARPRQE* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02874 479 Pfam Seed dormancy control 279 353 IPR025422 GO:0006351|GO:0043565
Rops8g02874 479 FunFam BZIP family transcription factor 187 236 - -
Rops8g02874 479 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 186 230 IPR004827 GO:0003700|GO:0006355
Rops8g02874 479 SMART brlzneu 184 257 IPR004827 GO:0003700|GO:0006355
Rops8g02874 479 PANTHER TRANSCRIPTION FACTOR TGA9 97 478 - -
Rops8g02874 479 ProSiteProfiles DOG1 domain profile. 261 475 IPR025422 GO:0006351|GO:0043565
Rops8g02874 479 MobiDBLite consensus disorder prediction 87 141 - -
Rops8g02874 479 Coils Coil 207 234 - -
Rops8g02874 479 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 191 206 IPR004827 GO:0003700|GO:0006355
Rops8g02874 479 MobiDBLite consensus disorder prediction 1 38 - -
Rops8g02874 479 Pfam bZIP transcription factor 188 217 IPR004827 GO:0003700|GO:0006355
Rops8g02874 479 SUPERFAMILY Leucine zipper domain 188 230 IPR046347 GO:0003700|GO:0006355
Rops8g02874 479 MobiDBLite consensus disorder prediction 87 191 - -
Rops8g02874 479 MobiDBLite consensus disorder prediction 163 177 - -
Rops8g02874 479 Gene3D - 187 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02874 Rops-Chr8 64649589 64656868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02874 58 479 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 64.786 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops8g02874 DOG1 6.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02874 K14431 - gmx:100815176 783.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02874 8 64649589 64656868 Rops6g00663 6 17077182 17084537 PCT