LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops8g02873	ATGTTGAATAATCTTTGTGCAGGAGAGAAAGGATATGGTTACAAAGGGAGCTCCTTCCATCGTATAATCAAAGAATTCATGATTCAAGGAGGGGACTTCACTGAGGGAGATGGAACTGGTGGAATTAGTATCTATGGTCCTAGTTTAAAAGACGAGAGTTTTGCCTTGAAGTATATTGGTCCTGAAGTTTTGAGCATGGCAAATGCTGGTCCTAATACCAATGGTAGTCAAATTTTTATTTGCACTGTAATGACTCCATGGTTAGACAATTGCCATGTTGTGTTTGGACATGTCATTGATGGAATGGATGTTGTGAAGACACTCGAGTTCCAGGAGACAAGCAGGTTAGATATCCCTCAAAAGCCTTGCAGAATTGTTGATTGCGGAGAATTGCCTATAGATGGTTGA	408	0.4044	MLNNLCAGEKGYGYKGSSFHRIIKEFMIQGGDFTEGDGTGGISIYGPSLKDESFALKYIGPEVLSMANAGPNTNGSQIFICTVMTPWLDNCHVVFGHVIDGMDVVKTLEFQETSRLDIPQKPCRIVDCGELPIDG*	136

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops8g02873	135	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	1	130	IPR002130	GO:0000413\|GO:0003755
	Rops8g02873	135	ProSitePatterns	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	14	31	IPR020892	GO:0003755\|GO:0006457
	Rops8g02873	135	SUPERFAMILY	Cyclophilin-like	4	131	IPR029000	-
	Rops8g02873	135	Gene3D	-	2	134	IPR029000	-
	Rops8g02873	135	FunFam	Peptidyl-prolyl cis-trans isomerase CYP19-2	2	131	-	-
	Rops8g02873	135	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	4	131	-	-
	Rops8g02873	135	PIRSF	Peptidylpro_ismrse	2	134	IPR024936	GO:0003755
	Rops8g02873	135	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	77	89	IPR002130	GO:0000413\|GO:0003755
	Rops8g02873	135	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	90	105	IPR002130	GO:0000413\|GO:0003755
	Rops8g02873	135	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	19	31	IPR002130	GO:0000413\|GO:0003755
	Rops8g02873	135	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	62	77	IPR002130	GO:0000413\|GO:0003755
	Rops8g02873	135	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	13	129	IPR002130	GO:0000413\|GO:0003755

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops8g02873	Rops-Chr8	64633894	64634929	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops8g02873	5	128	U-box Gene Family	AT5G67530	44.000	7.20e-23	91.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops8g02873	K03768		-	gmx:100785805	244.202