Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02859 ATGGATTCGAATTCCCGTTATCACCAAAACAATTCTGGGTTGCTTCGCTTTCGTTCTGCCCCTAGTTCAGTGGGCACAAATTTCAAACAGGGTGAAGGTGGTGTTGCCAATAATGGTAACAACCCTTGGGAGGATTTTGAACCGGAGAGGCTGGTTTTGAGATTCATGAATTCCGGTGACAGAAACGACACCGCTTCACCTAGCTTACGAGAATTCGTGGAAAATAATAATAAACCTTCTAATAATAAAGCAACCAACGATTCATCATCATCACCTCTGAGCCGCATGAATTCACAGCAGGGTCATAGTACTTGTGGTGCAACAAGTTCAAGCATGGTTGATTCTATGAGATTGGATCACCCCAAAAGCTTTGACTCACATCTTCCGAGACAAAGTAGCTTCCCTGCTGGCCATTTTTCCAACATCATCTCCTTTCAGAATGGGTATGATACTATTAAAGGTGTTGGAAACTATGGTGGGGTGAATGGCTGTGATGGTAAACTTAGTCTATCTATGAACACATTGAAGAATCAAGTGAACTTCTCGCCAAGAAGTCCTTCGTGTTTGGGAATGTTATCTCACACCTCCAAAATGGGGAGTGAAGGAACAAGCCGTGATGAGGGGAGACAGGGAGATAGCAATGGTGATGCTCGATATTGTAGTCCTAAATTTCCTTATGATTCTTGTAATGAGACCTCACACCTCTCAGATAAACTCATTGACTCAAAAAGAGAACGAAATACTAATGACAAGTTGTTACTTTCTGATGCTCAGAATGGAGAGCTAGGAAATCAAGTTCATACACTATCGCATTACTTGAGTTTGCCAAGAAAGTCATCAGAGATGTTTGCTTTGGAGAATTTACTTCAGTTCCCAGATTCTGTTCCCGGCAATATAAGAGCAAAGAGAGGCTTTGCTACTCATCCTCGAAGCATTGCCGAAAGGGTGAGAAGAACTCGGATCAGTGAACGAATGAGAAAATTGCAAGAGCTGGTTCCAAACATTGACAAGCAAACCAGCACAGCAGACATGTTGGATTTGGCTGTAGAGCACATTAAAGATCTTCAGAAACAATTCAAGACTCTGAGTGAAAAACGAGCTAAATGCAAATGTACAAGCTTGCAGAAGTCAGAAATGAATCAAATTGCTTGA 1152 0.4184 MDSNSRYHQNNSGLLRFRSAPSSVGTNFKQGEGGVANNGNNPWEDFEPERLVLRFMNSGDRNDTASPSLREFVENNNKPSNNKATNDSSSSPLSRMNSQQGHSTCGATSSSMVDSMRLDHPKSFDSHLPRQSSFPAGHFSNIISFQNGYDTIKGVGNYGGVNGCDGKLSLSMNTLKNQVNFSPRSPSCLGMLSHTSKMGSEGTSRDEGRQGDSNGDARYCSPKFPYDSCNETSHLSDKLIDSKRERNTNDKLLLSDAQNGELGNQVHTLSHYLSLPRKSSEMFALENLLQFPDSVPGNIRAKRGFATHPRSIAERVRRTRISERMRKLQELVPNIDKQTSTADMLDLAVEHIKDLQKQFKTLSEKRAKCKCTSLQKSEMNQIA* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02859 383 MobiDBLite consensus disorder prediction 1 37 - -
Rops8g02859 383 Pfam Helix-loop-helix DNA-binding domain 311 356 IPR011598 GO:0046983
Rops8g02859 383 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 308 370 IPR036638 GO:0046983
Rops8g02859 383 MobiDBLite consensus disorder prediction 186 217 - -
Rops8g02859 383 Coils Coil 345 372 - -
Rops8g02859 383 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 20 376 - -
Rops8g02859 383 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 305 355 IPR011598 GO:0046983
Rops8g02859 383 FunFam Transcription factor bHLH130 family 306 375 - -
Rops8g02859 383 MobiDBLite consensus disorder prediction 59 110 - -
Rops8g02859 383 MobiDBLite consensus disorder prediction 1 43 - -
Rops8g02859 383 SMART finulus 311 361 IPR011598 GO:0046983
Rops8g02859 383 Gene3D - 307 381 IPR036638 GO:0046983
Rops8g02859 383 MobiDBLite consensus disorder prediction 58 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02859 Rops-Chr8 64341921 64344684 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02859 1 361 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 42.408 1.43e-65 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops8g02859 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02859 - - gmx:100796534 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02859 8 64341921 64344684 Rops8g02859 8 64341921 64344684 ECH
Rops8g02859 8 64341921 64344684 Rops6g03619 6 61206049 61210506 ECH
Rops8g02859 8 64341921 64344684 Rops6g00643 6 16811196 16814431 PCT