Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02858 ATGGAGCAAGCTACAGTAGGGTTACGTGGATCCACTCAAGAAGGCACAGTATTCGAGTCCATTCAATTCAACGAAGAAATCCAAGGAATCATGACGCCAGCACCGGCGCCGGAAAACGCTAGTTCATTCACCGCGTTGCTTGAGCTTCCGCCGACTCAGGCTGTGGAGCTTCTTTACTCACCGGATTGTGACGGAGCCTCCGCCGCCGCTCGGAGACCGCCTTCTTGCGACGTCAGCGTGAATCAGAAACCCTATCAGTTCAGTTCGTACAGTGGCAATTTGACCTTCCCTTCCAACGCCGCGTTGATCGAACGCGCCGCTAAGTTCTCCGTGTTCGCCGGAGAGAAGTCGCCGCCGCCTCCGGCTGGGGACACGCTCCTAGCTCCGGCAGGTTCCGGTGCGAATTTGGATAAAGTGAAGAACGAGCCACAAGAGACCGATTCGAACCCGTGCTCGACGCAAGGTTGCGTTTCGGATCCCGCCGTTGAGAACAGGAATCAGAGAACCGCGAAGAGAAAGGAGCGAGAGAAGAAGGTCAAAGGATCGTCGAAGAAGAGTAAGAGCGTCGCCGATGAGAACTCCGGTGACGGCGAGAAGCTTCCCTATGTTCATGTTCGCGTTCGCCGAGGTCAAGCCACAGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATCAATGCTCGCATGAAGCTTTTACAAGAGTTGGTCCCCGGTTGTGACAAGATATCTGGAACGGCTTTGGTTCTGGATGAAATCATCAACCACGTGCAATCTCTGCAACGTCAAGTGGAGATCTTATCAATGAAACTGGCAGCAGTTAACCCAAGAATTGATTTCAACTTAGACAGCTTATTGACTACTGATGGGGCATCTCTAATGGACAGTAACTTACCTAGCATGGTTACGCCTCTCATGTGGCCAGAAATCCCACTCAATGGTAACAGACAGCATTATCAACAGTGGCAATTCGATGCATTCCACCATCCACTTTGGGGGAGGGAAGAAGACAACCATAATTTCATGACTCCGGAACAGTCACTTTTGAGTTATGACTCGTCGGCAAATTCAGCATCTCTGCACTCAAACCAATTGAAGATGGAGCTCTGA 1113 0.5121 MEQATVGLRGSTQEGTVFESIQFNEEIQGIMTPAPAPENASSFTALLELPPTQAVELLYSPDCDGASAAARRPPSCDVSVNQKPYQFSSYSGNLTFPSNAALIERAAKFSVFAGEKSPPPPAGDTLLAPAGSGANLDKVKNEPQETDSNPCSTQGCVSDPAVENRNQRTAKRKEREKKVKGSSKKSKSVADENSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTALVLDEIINHVQSLQRQVEILSMKLAAVNPRIDFNLDSLLTTDGASLMDSNLPSMVTPLMWPEIPLNGNRQHYQQWQFDAFHHPLWGREEDNHNFMTPEQSLLSYDSSANSASLHSNQLKMEL* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02858 370 Pfam Helix-loop-helix DNA-binding domain 215 262 IPR011598 GO:0046983
Rops8g02858 370 SMART finulus 217 267 IPR011598 GO:0046983
Rops8g02858 370 Gene3D - 208 281 IPR036638 GO:0046983
Rops8g02858 370 Coils Coil 251 271 - -
Rops8g02858 370 FunFam transcription factor bHLH48-like isoform X1 208 280 - -
Rops8g02858 370 MobiDBLite consensus disorder prediction 145 164 - -
Rops8g02858 370 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 209 280 IPR036638 GO:0046983
Rops8g02858 370 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 211 261 IPR011598 GO:0046983
Rops8g02858 370 CDD bHLH_AtBPE_like 201 286 - -
Rops8g02858 370 MobiDBLite consensus disorder prediction 181 202 - -
Rops8g02858 370 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 110 353 IPR024097 GO:0006355
Rops8g02858 370 MobiDBLite consensus disorder prediction 114 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02858 Rops-Chr8 64287539 64293876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02858 4 370 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 51.662 4.13e-111 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops8g02858 HLH 1.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02858 - - vun:114168708 597.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02858 8 64287539 64293876 Rops8g02858 8 64287539 64293876 ECH