Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02853 ATGATGCCTCATCACATTGGAAGTTCTTCTCAAGGCTTGGTGAATAATTTGACCCAAAATTCCACCCAAGGTGATGTTTTTTCTATGCCCCAATTTGATCCTTCAACTTCATCCTCAATCTCAAATGATTTGGAGGAAGTGCTAGATGAAAAAGACATTGAAGAAAGTCTAAATCGACCCATGTCATTGCCTTACCAACTTCAACAATATGCAATGAATGAGAGGGAACAAAATAATGATTCAAGCCTTACAAAAACAATTAATGTTAAGAGCTCTGTATTTCGAGGAGTTACCAGGTGCCATGACAAACGTTTTGAAGCATTTGCATGGGATAATACTATTCCCGGAGAAAGAGGAAGAACAGGTGGATATTTGACTGAATTTGAAGCCGCCAGAGCTCATGATTTGGTTTCAATTAAGATAGGGGGTGTATCTACTACAGCTACAAATTTTCCTGTGAGGTGCTATTGGAAGGAAATACGTGAAATGCAAGATATGAGCAAAAGAGAGTACATCCTTGCTGTTAGAAGAAACAGGACCGCGGAGGATGCCAGGAAATGGGAAGCGAGGCTCGGTCAGATTAGGGGGAGGAGGCGAAGCATATACTTGGGAACATTTTGTACTGCTGAGGATGCAGCCAGAGCTTATGATATTGCATTGATAAAACTGAAGGGCATGGCTGCTATTACCAACTTTGATCTGAGTACTTATGATGTCAAGGGCATTATGGACAGCGTGAGCCTTCCTTCTTTACAGAATGCCACCAATAAAGCAAATGCTCGTAAGGGAAAGGCGCCTAAAGGAAAATCAAGCAGCTCCCAAGACCAACTCAGTCCTCAAGAAATCCCGAGTCAACAACTGTGCAACTCATCCTCTTTTCATAGTTACCAAAACCCTAATCTCATCCCAAGTAACCCTTATATTCTTGATGCAATGACTGATACTGAAATCAATGACAACTCTAGTTGGAACTATGGAGCAATGTTTCCTAACCAGGGTGGTAGTACTGTACAACAATCACTGTTGTTGGGGACTGGCCAGGATTTTCAAGCAGCACAAGCCTTGCAGAACAACTTGTATGTTAACAATGGTTTCCACCAGAACCTTCTCAACAACCAGGTTCTGATGAAACAGAACCATAGCCGCCTTAACCTTGTTCATGGCTCTCAGAATCCTGAGATCCAAAATTATCTGAGTTTCCCAAATTGTCCATCTGATTTCGGAACACAGTTACTTGGGGCAAAGATGAAATCTTTAAGCCTCAATGGAGAATCTGATCTCACCTCCCCAAATTTGCCATCTGATTTCGGAACACAGTTACTTGGAGCAAAGATGCAATCTTTAAGCCTCAATGGAGAATCTCCAATGAATCACATGGTGAATCAAAGTGTAGGGGCAGCAAATGTTGTTGGTTCATTTGGGTTACAATCTCTAGTGCAGCCATCGTTTGAAGCAGCAAAGCTTCAGCAACCTGGATTGAACCAAAGTTATGGATCTTACAACTACCATCCGAACACTTTGAACCAGAACCCATATCAGAACTTAAACTCATCATGCTTCTCTGATTGTATTCAGAATCCTGGTTATGCACCAAACCCTTATTCTCAAAGTGAGATGAATGAAGGTCAAGAGGATTTCGACATCAGTCAATTTCTCAACATGGAAGAAAATGATTTTGCTGGTGATGCAGACGGATGGGAGGCTGCAATGCAGGTTGATCATTAG 1725 0.418 MMPHHIGSSSQGLVNNLTQNSTQGDVFSMPQFDPSTSSSISNDLEEVLDEKDIEESLNRPMSLPYQLQQYAMNEREQNNDSSLTKTINVKSSVFRGVTRCHDKRFEAFAWDNTIPGERGRTGGYLTEFEAARAHDLVSIKIGGVSTTATNFPVRCYWKEIREMQDMSKREYILAVRRNRTAEDARKWEARLGQIRGRRRSIYLGTFCTAEDAARAYDIALIKLKGMAAITNFDLSTYDVKGIMDSVSLPSLQNATNKANARKGKAPKGKSSSSQDQLSPQEIPSQQLCNSSSFHSYQNPNLIPSNPYILDAMTDTEINDNSSWNYGAMFPNQGGSTVQQSLLLGTGQDFQAAQALQNNLYVNNGFHQNLLNNQVLMKQNHSRLNLVHGSQNPEIQNYLSFPNCPSDFGTQLLGAKMKSLSLNGESDLTSPNLPSDFGTQLLGAKMQSLSLNGESPMNHMVNQSVGAANVVGSFGLQSLVQPSFEAAKLQQPGLNQSYGSYNYHPNTLNQNPYQNLNSSCFSDCIQNPGYAPNPYSQSEMNEGQEDFDISQFLNMEENDFAGDADGWEAAMQVDH* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02853 574 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 78 331 - -
Rops8g02853 574 MobiDBLite consensus disorder prediction 253 284 - -
Rops8g02853 574 MobiDBLite consensus disorder prediction 8 40 - -
Rops8g02853 574 ProSiteProfiles AP2/ERF domain profile. 171 233 IPR001471 GO:0003700|GO:0006355
Rops8g02853 574 SMART rav1_2 186 239 IPR001471 GO:0003700|GO:0006355
Rops8g02853 574 SMART rav1_2 93 158 IPR001471 GO:0003700|GO:0006355
Rops8g02853 574 CDD AP2 186 235 IPR001471 GO:0003700|GO:0006355
Rops8g02853 574 SUPERFAMILY DNA-binding domain 183 235 IPR016177 GO:0003677
Rops8g02853 574 SUPERFAMILY DNA-binding domain 92 153 IPR016177 GO:0003677
Rops8g02853 574 Gene3D AP2/ERF domain 93 154 IPR036955 GO:0003700|GO:0006355
Rops8g02853 574 Gene3D AP2/ERF domain 174 235 IPR036955 GO:0003700|GO:0006355
Rops8g02853 574 MobiDBLite consensus disorder prediction 266 284 - -
Rops8g02853 574 ProSiteProfiles AP2/ERF domain profile. 93 152 IPR001471 GO:0003700|GO:0006355
Rops8g02853 574 CDD AP2 92 153 IPR001471 GO:0003700|GO:0006355
Rops8g02853 574 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02853 Rops-Chr8 64241447 64246664 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02853 85 249 AP2-EREBP Transcription Factor Family AT1G51190 43.316 1.83e-39 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02853 K09285 - pvu:PHAVU_001G137500g 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02853 8 64241447 64246664 Rops8g02853 8 64241447 64246664 ECH