Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02852 ATGGCTACATTCTGTATATACTACCTGTTCTTTCTCTCTTTGATCTTTCCAATCTTCAATCTTAGTTCATCTTCATCAGAGGGTGATACCCTTCTCTCCTTCAAGTCCTCCATTGGAGACTCTAAAAATGCCTTGTCTGGCTGGTCAAATACTTCATCAAACCACTACTGTAACTGGACTGGAATCACTTGTTCCACCACACCTTCACTCTCAGTAACTTCTATTAATCTTCAGAACTTAAACCTTTCTGGGGATATCTCACCTTCTTTATGTGACCTTCCAAATCTTTCTTATCTCAACCTTGCTGATAATATCTTCAACCAGCCCATCCCTCTTCATCTTTCACTGTGCAGTTCTTTGGAAACTTTGAATCTTAGTGCCAATCTTATATGGGGCACTATCCCATTTCAGATTTCTCAGTTTACTTCCTTGAGAGTGCTTGATTTGAGTAGAAACCATATAGAAGGAAATATCCCAGCAAGTTTAGGCTCCTTGAAGAACCTCCAAGTTCTTAACTTGGGAAGTAACTGGCTTTCAGGAAATGTACCAGCTGTTTTTAGCAACTTAACTAAGCTTGAAGTCCTTGATTTGTCTCAGAATCCTTACTTGGTGAGTGAGATTCCAGAGGATATTGGTGAGCTCGGAAATCTAAAGCAACTTCTGTTGCAAAGCTCTTCTTTTCAAGGTGAAATTCCAGATTCTTTGGAGGGCCTGCTTAGTTTGACTCATTTAGATCTCTCTGAGAACAATCTAACAGGTGGGTTTCCAAAGACTCTTGTATCTTCTCTCAAGAACCTGGTTTCTTTTGATGTTTCGCAAAACAAGCTTTTGGGGCCATTTCCAAATGGCATGTGTAAAGGACAAGGCCTTATAAATCTTAGCCTTCATACAAATACCTTCACTGGTTCAATACCCAACTCCATTGGTGAATGTAAGAGTCTTGAGAGATTCCAAGTTCAGAACAATGGTTTCTCTGGAGATTTCCCCATTGCACTGTGGTCATCACCAAAAATTAAGCTCATCAGAGCTGAAAACAATAGATTCTCAGGACAAATACCTGAGTCAATATCAGGAGCTTCCCAGTTAGAGCAAGTTCAGCTCGACAATAACACCTTTGCTGGTAAAATTCCTCAAGGTCTTGGCTTTGTCAAGAGCTTATACAGATTCTCAGCTTCTCTCAATAGTTTCTATGGTGAACTTCCTCCAAATTTTTGTGACTCTCCTGTTATGAGCATAGTGAATCTCTCTCACAATTATCTTTCTGGTCAAATCCCAGAGCTGAGAAAATGCAGGAAACTAGTTTCACTGTCTTTGGCTGATAACAGTCTAACAGGAGAAATCCCTCCTTCACTTGCTGAGCTACCTGTGTTGACTTACCTTGATCTTTCAGATAACAACCTCACTGGTTCAATCCCACAAGGGCTTCAAAACTTGAAGCTTGCACTTTTCAATGTGTCCTTCAATCAGCTATCAGGTAAAGTACCATACTCCTTGATTTCTGGTCTCCCTGCCTCATTTTTGGAAGGAAACCCTGGTCTTTGTGGTCCTGGATTGCCCAACTCATGTTCTGATGACATGCCAAGACACCATACTACTGGTCTTACAACTTTAACATGTACCCTTATCTCTTTAGCCTTTGTTGTTGGTACTGCCATTGTTGCTGGTGGATTTATACTGTATAGAAGATCTTGCAAAGGGAGTCAAGTAGGGGTTTGGCGCTCAGTGTTCTTCTATCCTCTAAGAATTACTGAGCATGATTTGCTTATTGGGATGAATGAGAAAAGCTCAATGGGAAATGGTGGAGTTTTTGGTAAAGTTTATGCTGTGAGTTTACCTAGTGGTGAACTAGTATCTGTGAAGAAGCTTGTTAAGTTTGGAAACCAGTCCTCAAAAAGTTTGAAAGCTGAGGTCAAGACTTTGGCAAAAATTAGGCATAAGAATGTTGTTAAAATTCTGGGGTTCTGCCATTCTGATGAGTCAGTTTTTCTCATTTATGAATACTTGCATGGAGGAAGCTTAGGGGATTTGATTAACAGTCACAATTTTCAGTTGCATTGGGGAGTTAGATTGAGGATTGCCATTGGAGTTGCTCAAGGACTTGCTTATCTTCACAAAGATTATGTCCCTCACTTGCTTCACAGAAATGTCAAGTCAAGTAACATTCTATTGGATGCAAACTTTGAGCCAAAGCTGACAGATTTTGCTCTTCATAGAATCCTGGGAGAAGCTGCATTTCAATCAACTTTGGTTTCTGAAGCAGCATCTTCCTGTTATATTGCACCAGAATATAGTTACAGCAAGAAAGCAACTGAACAATTAGACATCTACAGCTTTGGTGTTGTATTGCTAGAGCTAGTGAGTGGCAGGCAAGCAGAGAAAGCAGAGTCAAGTGACTCACTTGACATAGTGAAGTGGGTTAGAAGGAAAGTGAACATCACCAATGGGATACATCAAGTTCTTGACCCTAGAATATCACATACTTGTCACCAAGAAATGGTTGGAGCTTTAGATATTGCTCTTCGTTGCACTTCTGTGGTGCCTGAGAAAAGGCCATCAATGATTGAAGTTGTTAGAGGCCTTCAGTCCCTTGAGTCAAGGACTTGCATTGCAAATTTGCAGGATCCAAGTGATGAACCCTCCATTCCAGTCTAA 2652 0.4057 MATFCIYYLFFLSLIFPIFNLSSSSSEGDTLLSFKSSIGDSKNALSGWSNTSSNHYCNWTGITCSTTPSLSVTSINLQNLNLSGDISPSLCDLPNLSYLNLADNIFNQPIPLHLSLCSSLETLNLSANLIWGTIPFQISQFTSLRVLDLSRNHIEGNIPASLGSLKNLQVLNLGSNWLSGNVPAVFSNLTKLEVLDLSQNPYLVSEIPEDIGELGNLKQLLLQSSSFQGEIPDSLEGLLSLTHLDLSENNLTGGFPKTLVSSLKNLVSFDVSQNKLLGPFPNGMCKGQGLINLSLHTNTFTGSIPNSIGECKSLERFQVQNNGFSGDFPIALWSSPKIKLIRAENNRFSGQIPESISGASQLEQVQLDNNTFAGKIPQGLGFVKSLYRFSASLNSFYGELPPNFCDSPVMSIVNLSHNYLSGQIPELRKCRKLVSLSLADNSLTGEIPPSLAELPVLTYLDLSDNNLTGSIPQGLQNLKLALFNVSFNQLSGKVPYSLISGLPASFLEGNPGLCGPGLPNSCSDDMPRHHTTGLTTLTCTLISLAFVVGTAIVAGGFILYRRSCKGSQVGVWRSVFFYPLRITEHDLLIGMNEKSSMGNGGVFGKVYAVSLPSGELVSVKKLVKFGNQSSKSLKAEVKTLAKIRHKNVVKILGFCHSDESVFLIYEYLHGGSLGDLINSHNFQLHWGVRLRIAIGVAQGLAYLHKDYVPHLLHRNVKSSNILLDANFEPKLTDFALHRILGEAAFQSTLVSEAASSCYIAPEYSYSKKATEQLDIYSFGVVLLELVSGRQAEKAESSDSLDIVKWVRRKVNITNGIHQVLDPRISHTCHQEMVGALDIALRCTSVVPEKRPSMIEVVRGLQSLESRTCIANLQDPSDEPSIPV* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02852 883 Pfam Protein kinase domain 593 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02852 883 SUPERFAMILY L domain-like 205 519 - -
Rops8g02852 883 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 261 525 - -
Rops8g02852 883 ProSiteProfiles Protein kinase domain profile. 592 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02852 883 SMART LRR_typ_2 141 164 IPR003591 -
Rops8g02852 883 SMART LRR_typ_2 263 287 IPR003591 -
Rops8g02852 883 SMART LRR_typ_2 165 188 IPR003591 -
Rops8g02852 883 SMART LRR_typ_2 189 214 IPR003591 -
Rops8g02852 883 SMART LRR_typ_2 238 262 IPR003591 -
Rops8g02852 883 SMART LRR_typ_2 454 477 IPR003591 -
Rops8g02852 883 FunFam Leucine-rich repeat family protein 26 183 - -
Rops8g02852 883 FunFam - 586 667 - -
Rops8g02852 883 Gene3D Ribonuclease Inhibitor 189 256 IPR032675 -
Rops8g02852 883 Gene3D Ribonuclease Inhibitor 24 185 IPR032675 -
Rops8g02852 883 Pfam Leucine rich repeat 143 201 IPR001611 GO:0005515
Rops8g02852 883 Pfam Leucine rich repeat 431 490 IPR001611 GO:0005515
Rops8g02852 883 Gene3D Phosphorylase Kinase; domain 1 586 667 - -
Rops8g02852 883 CDD STKc_IRAK 597 863 - -
Rops8g02852 883 Gene3D Transferase(Phosphotransferase) domain 1 668 876 - -
Rops8g02852 883 ProSiteProfiles Leucine-rich repeat profile. 456 479 IPR001611 GO:0005515
Rops8g02852 883 SUPERFAMILY L domain-like 25 302 - -
Rops8g02852 883 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Rops8g02852 883 PRINTS Leucine-rich repeat signature 241 254 - -
Rops8g02852 883 PRINTS Leucine-rich repeat signature 454 467 - -
Rops8g02852 883 ProSiteProfiles Leucine-rich repeat profile. 143 166 IPR001611 GO:0005515
Rops8g02852 883 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 668 868 - -
Rops8g02852 883 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 862 - -
Rops8g02852 883 SUPERFAMILY Protein kinase-like (PK-like) 600 865 IPR011009 -
Rops8g02852 883 Gene3D Ribonuclease Inhibitor 260 531 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02852 Rops-Chr8 64226451 64230052 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02852 31 863 Receptor kinase-like Gene Family AT5G06940 64.558 0.0 1068
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Rops8g02852 Pkinase 7.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02852 - - gmx:100794428 1510.35