Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02851 ATGGACAAAAACAACCGACTTTGGCTTGGCTGCGTTTATTATCGTACTTTGTCTTCGATTTTCTCGATTATTATCATCATCATACACTGTTCTCTCTTCGATTTGAGGGAACAGTATAAGAGTTTCAGGATCGGTGAACCCAACCACCCAGGTGGTCAAAGAGTAATGGAGTCTCATGACGAGACAGGATGCCAGGCACCAGAACGCCCCATTCTCTGCATTAATAATTGTGGTTTCTTTGGAAGGGCAGCTACCATGAACATGTGCTCCAAGTGTTACAAGGACATGCTGTTGAAGCAGGAGCAGGACAAGCTTGCAGCATCATCGGTTGAAAACATTGTGAATGGCAGTTCCAATGGCAATGGAAAGCAGGTTGTGACTGCAGGTGCTGTTGATGTACAAGTGGGAACTGTGGAGGTCAAGACAGCCAGTGCCCAGATTTCTGGAGATTCCTCCTCTGGTGAGAGTTTGGAGATGAAAGCCAAGAAGACTGGTCCCAGCAGATGTGCTACTTGCCGGAAACGTGTTGGATTAACTGGTTTCAACTGTAAATGTGGCAACATCTTTTGTGCAATGCATCGCTATTCTGATAAACATGATTGCCCTTTTGATTATAGGACTGTTGGTCAGGAGGCCATAGCGAAAGCCAACCCAGTGATTAAGGCAGATAAGATTGATAAAATCTAG 687 0.4512 MDKNNRLWLGCVYYRTLSSIFSIIIIIIHCSLFDLREQYKSFRIGEPNHPGGQRVMESHDETGCQAPERPILCINNCGFFGRAATMNMCSKCYKDMLLKQEQDKLAASSVENIVNGSSNGNGKQVVTAGAVDVQVGTVEVKTASAQISGDSSSGESLEMKAKKTGPSRCATCRKRVGLTGFNCKCGNIFCAMHRYSDKHDCPFDYRTVGQEAIAKANPVIKADKIDKI* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02851 228 ProSiteProfiles Zinc finger A20-type profile. 67 101 IPR002653 GO:0003677|GO:0008270
Rops8g02851 228 Gene3D - 142 224 IPR035896 -
Rops8g02851 228 Pfam AN1-like Zinc finger 169 205 IPR000058 GO:0008270
Rops8g02851 228 Pfam A20-like zinc finger 71 94 IPR002653 GO:0003677|GO:0008270
Rops8g02851 228 ProSiteProfiles Zinc finger AN1-type profile. 163 209 IPR000058 GO:0008270
Rops8g02851 228 PANTHER AN1-TYPE ZINC FINGER PROTEIN 68 228 - -
Rops8g02851 228 Gene3D - 56 118 - -
Rops8g02851 228 SMART AN1_Zf_4 169 206 IPR000058 GO:0008270
Rops8g02851 228 SMART A20_3 70 94 IPR002653 GO:0003677|GO:0008270
Rops8g02851 228 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 72 110 - -
Rops8g02851 228 FunFam Zinc finger AN1-type containing 6 142 224 - -
Rops8g02851 228 SUPERFAMILY AN1-like Zinc finger 154 223 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02851 Rops-Chr8 64205443 64209966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02851 60 228 C2H2 Transcription Factor Family AT3G52800 41.176 2.09e-38 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02851 - - gmx:100499995 317.005