Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02850 ATGGCACAGAAGAATAAAGCTAGGGTTTCCGATGATGAAGAAATCGAAGCTCAATCTCAGAATAGCCTTTACCAGGTTATTGGGGTGGAGAGAACGGCCTCTCAACAGGAAATAAAGAAGGCGTATTACAAGTTGGCATTGCGCCTCCATCCTGATAAGAACCCTGGTGATGAGGAAGCTAAAGAGAAATTTCAGCAACTGCAAAAAGTTATCTCAATTCTTGGGGATGAAGAGAAACGGGCCCTCTATGATCAGACTGGTTGTGTTGATGATGCTGATCTTGCTGGAGATGTTGTTCAGAATCTTCAAGAGTTTTTCAGAACAATGTACAAGAAGGTCACTGAAGCTGATATTGAGGAGTTCGAAGCAAACTATAGGGGATCTGTCTCAGAGAAAAATGATTTGATTGATCTCTACAAGAAGTGCAAGGGGAATATGAACAGCCTTTTTTGTTCAATGCTTTGTTCAGATCCTAGACTTGACTCACACCGATTCAAGGATATTCTTGATGAGGCTATAGCTGCTGGAGAACTAAAGGCAACAAAAGCCTACCAGAAATGGGATAAGGAAGTGTCTGAAACCAAACCACCAACAAGTCCTTTAAGGAGGAGGGCAAAATCAAATAAGCAGTCTGAAACAGATCTGTTTGCAATCATAGCGCAACGCCGAAATGAGAGGAAAGGCCAGTTTGATTCAATGTTCTCATCTCTAGTTTCAACATATGGTGGAGGTGATATGCCGGAACCTTCTGAGGAGGAATTCGAAGCTGCACAGAGAAAGATGGAGAGTAGAAGATCCTCAAAAAAATCAAAGCAGAAGTAA 822 0.4197 MAQKNKARVSDDEEIEAQSQNSLYQVIGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTGCVDDADLAGDVVQNLQEFFRTMYKKVTEADIEEFEANYRGSVSEKNDLIDLYKKCKGNMNSLFCSMLCSDPRLDSHRFKDILDEAIAAGELKATKAYQKWDKEVSETKPPTSPLRRRAKSNKQSETDLFAIIAQRRNERKGQFDSMFSSLVSTYGGGDMPEPSEEEFEAAQRKMESRRSSKKSKQK* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02850 273 PRINTS DnaJ domain signature 79 98 IPR001623 -
Rops8g02850 273 PRINTS DnaJ domain signature 24 42 IPR001623 -
Rops8g02850 273 PRINTS DnaJ domain signature 42 57 IPR001623 -
Rops8g02850 273 PRINTS DnaJ domain signature 59 79 IPR001623 -
Rops8g02850 273 SMART dnaj_3 21 79 IPR001623 -
Rops8g02850 273 MobiDBLite consensus disorder prediction 238 273 - -
Rops8g02850 273 MobiDBLite consensus disorder prediction 188 214 - -
Rops8g02850 273 CDD DnaJ 24 76 IPR001623 -
Rops8g02850 273 Pfam DnaJ domain 23 84 IPR001623 -
Rops8g02850 273 ProSiteProfiles dnaJ domain profile. 22 87 IPR001623 -
Rops8g02850 273 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 13 273 IPR042977 -
Rops8g02850 273 MobiDBLite consensus disorder prediction 188 210 - -
Rops8g02850 273 Gene3D DnaJ domain 6 100 IPR036869 -
Rops8g02850 273 SUPERFAMILY Chaperone J-domain 21 96 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02850 Rops-Chr8 64188338 64191366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02850 24 84 C2H2 Transcription Factor Family AT1G74250 37.879 9.87e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02850 K09529 - gmx:100793909 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02850 8 64188338 64191366 Rops8g02850 8 64188338 64191366 ECH