Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02849 ATGGAGGAGACAGATAACGTTGAAATGAGGTATAAGAAGATGGAAGAATATGAAGTGATTGAACAAATTGGAAGGGGAGCATTTGGTTCAGCTTTTCTTGTTCTTCACAAGTCTGAGAAAAAGAGGTATGTGCTGAAAAAGATTCGGTTGGCTAAGCAGACAGAGAAGTTCAAACGCACAGCACACCAAGAGATGAACCTGATTGCAAAACTAAATAACCCATATATTGTGGAATACAAAGATGCTTGGGTGGAAAAGGAGGACCATATATGCATTATAACTGGCTATTGTGAAGGAGGCGACATGGCTGAGAACATAAAGAAAGCTCGAGGATCTTTTTTCCCCGAGGAGAAACTCTGCAAATGGCTGACTCAATTGTTGATAGCTGTGGACTACTTGCACTCCAATCGTGTAATCCATAGAGATCTCAAGTGTTCCAACATATTCCTCACCAAAGACAACAACATTCGGCTTGGTGACTTTGGTCTTGCAAAGCGACTTAATGCAGAAGACCTTACCTCCTCGGTTGTTGGAACTCCAAATTACATGTGTCCTGAGCTCCTCGCTGATATACCATATGGTTATAAATCTGATATGTGGTCTCTTGGTTGCTGCATGTTTGAGATTGCTGCACATCAACCTGCATTTCGTGCTCCGGACATGGCTGGACTTATCAATAAAATAAACAGATCCTCCATTTCTCCACTGCCAATTGTTTATTCTTCCACACTGAAACAAATTATCAAGAGCATGCTGAGGAAAAACCCAGAACATAGGCCAACAGCAGCTGAATTGTTAAGGCATCCGCATTTACAACCTTATGTTCTTCGGTGTCAGAATGCGTCATCTAATGTTCTTCCAGTATATCCCATAGTTAACTCAAAGGATAAAACAAAAAAATCCTATAAATCTGGTGGTGGCAAGGACCATAGGGACAAAGAAGCAGGATTAGGAAATCGTTTGGAACGGGTCCATCCAATTGAGGGAAATGGAGATGTACAGACAAGAATTCTTCCTAATGATGGCGAGGTAACAATCTCAACCAGTGCAGAAGACAGCCTTGAGACCAAAATGGTTGATCTTACCAGTTACATGGTGGAATCTTCTACTAGTGTCAGTGGCTCAAAAGAAGGGTCAACAACATCTGAATCAACTATTAGCAGTATGTGCAAGGAGGATTTTAAAAGTAGACCTGCAAGCGAAACAGCAAACAGTGGGATCACTTCAAAGAGTACACAAGATTCTATGCATGAAGAACAAGGATTATCTGCTGAACATTTTCAGAAATTAGAAAGGGTTGACATAAATGCAGTGACCACAGAAGTTGAAGATGCCCATGCCCTTTCCCGTGAAGGATTTGATAATGCTGAAGCCCAGAGGGAAGATGCCAAACTTGAGGACTCCAGGAAATCAATAACATCAACATCCAGTGCAGGCAGTAGCTGCACTGATAAAGATAAGTCCATTAATGAGGAAAGATCATCACCAGTTGTGCATCCTATTAAGGTTGAACATGACACTGAATCTGAAAACTACTCAAAGAAAAGTGAAAACCCTGATACATTTGTAGAAGGCACACATATGAATTGCTTGTCATCTGAGAATAATAATGAACTTACAGTTAAGGATGATGACATAGCAAAAAAGCACATTATTTGCTCCAAACATAGAGATGATAATGCAGATGGGGTTGATCAGACACCTAGTGGTGTTTCATTGAGTGTACTTACTTCAATGGATGGTGATGAAACAACCAAGAATGTGTTGGATAGTCCCTGTCAGCAAAGAGCTGATGCTTTGGAATCTCTGCTTGAGTTGTGTGCTCAGCTGCTTAAGCAAGATAAACTTGAAGAGCTTGCTGGTGTGCTAAGACCATTTGGAAGAGAAGCTGTCTCATCCAGAGAAACAGCAATATGGTTGACAAAGAGCCTCATATCTGCCCAAAAATTTAATCCTGAAACCTAG 1965 0.4097 MEETDNVEMRYKKMEEYEVIEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKEDHICIITGYCEGGDMAENIKKARGSFFPEEKLCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNAEDLTSSVVGTPNYMCPELLADIPYGYKSDMWSLGCCMFEIAAHQPAFRAPDMAGLINKINRSSISPLPIVYSSTLKQIIKSMLRKNPEHRPTAAELLRHPHLQPYVLRCQNASSNVLPVYPIVNSKDKTKKSYKSGGGKDHRDKEAGLGNRLERVHPIEGNGDVQTRILPNDGEVTISTSAEDSLETKMVDLTSYMVESSTSVSGSKEGSTTSESTISSMCKEDFKSRPASETANSGITSKSTQDSMHEEQGLSAEHFQKLERVDINAVTTEVEDAHALSREGFDNAEAQREDAKLEDSRKSITSTSSAGSSCTDKDKSINEERSSPVVHPIKVEHDTESENYSKKSENPDTFVEGTHMNCLSSENNNELTVKDDDIAKKHIICSKHRDDNADGVDQTPSGVSLSVLTSMDGDETTKNVLDSPCQQRADALESLLELCAQLLKQDKLEELAGVLRPFGREAVSSRETAIWLTKSLISAQKFNPET* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02849 654 MobiDBLite consensus disorder prediction 368 421 - -
Rops8g02849 654 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Rops8g02849 654 FunFam serine/threonine-protein kinase Nek6 isoform X2 97 285 - -
Rops8g02849 654 SMART serkin_6 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02849 654 SUPERFAMILY Protein kinase-like (PK-like) 14 299 IPR011009 -
Rops8g02849 654 MobiDBLite consensus disorder prediction 399 418 - -
Rops8g02849 654 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02849 654 MobiDBLite consensus disorder prediction 297 318 - -
Rops8g02849 654 MobiDBLite consensus disorder prediction 368 391 - -
Rops8g02849 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Rops8g02849 654 MobiDBLite consensus disorder prediction 446 469 - -
Rops8g02849 654 MobiDBLite consensus disorder prediction 485 520 - -
Rops8g02849 654 Gene3D Phosphorylase Kinase; domain 1 2 96 - -
Rops8g02849 654 MobiDBLite consensus disorder prediction 470 484 - -
Rops8g02849 654 CDD STKc_Nek 17 271 - -
Rops8g02849 654 Gene3D Transferase(Phosphotransferase) domain 1 99 316 - -
Rops8g02849 654 MobiDBLite consensus disorder prediction 446 520 - -
Rops8g02849 654 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 14 605 - -
Rops8g02849 654 Pfam Protein kinase domain 17 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02849 654 FunFam Serine/threonine-protein kinase Nek6 1 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02849 Rops-Chr8 64180186 64185658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02849 16 272 MAP Kinase Kinase Kinase AT3G13530 32.558 1.42e-37 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Rops8g02849 Pkinase 9e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02849 K08857 - gmx:100793379 1023.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02849 8 64180186 64185658 Rops8g02849 8 64180186 64185658 ECH