Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02848 ATGGCTGACCCCTACTCTAATTTTTTCTCATCATCAGGTTTCTTCCAATTCAATCCCATCCTTCACCATTTCCCATCTTCAAACCCTTCTCCACACCACCATCCCTATCTCCACAACTTCATCAACAACCACAACATCACTGGCACCAGCTTTTTCCACCACCAGATTACCACTGCTTCTTCTTCTTCTTCTTCACCCCCTTCCCCTCCTCTCAGAGAAGAACTCCCCCTCTTGAGCCTCAGCCCAGCAAAGCAAGAGGAATATGAAGAGCAAGAGCAAGAGGACCACCACCTTTCTTGCACTGCCATGGATATGGAGGAGAGAGTGGTCCTCCACAGGAACCCCAAAGAGGAGGAAGAAGAAGATGAAACTGTCACTGTTGCACTCCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAAATGGCCACTGTGCTGTCCTCTAATTCCTCAGAGATCACTGATAAAGAACATGGAGATGGTGAGGATTCTGGTTTCATGGTCAACAGGCTCAACAAGGGTCAGTACTGGATCCCTACACCTTCTCAGATTCTCATTGGTCCTACACAGTTCTCTTGCCCTGTTTGCTGCAAAACATTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTTTGAGGGGTACCCAACCAACAGGCATGTTGAGGCTTCCTTGCTATTGTTGTGCCCCAGGGTGCAGGAACAACATTGATCACCCAAGAGCAAAGCCCCTCAAAGATTTTAGAACACTTCAAACACACTACAAAAGGAAGCATGGGATTAAGCCCTTCATGTGTAGAAAATGTGCCAAGGCTTTTGCTGTTAGGGGAGATTGGAGAACCCATGAAAAGAACTGTGGGAAGCTATGGTATTGCATATGTGGGTCTGATTTCAAGCACAAGAGATCTCTTAAAGATCACATCAAAGCTTTTGGAAGTGGCCATGCAGCTTATGGGATTGATGGTTTTGAAGAAGAAGATGAACCAGCATCCGACGTAGAGCAAGACAATGATTCCACCCAGTAA 1056 0.4669 MADPYSNFFSSSGFFQFNPILHHFPSSNPSPHHHPYLHNFINNHNITGTSFFHHQITTASSSSSSPPSPPLREELPLLSLSPAKQEEYEEQEQEDHHLSCTAMDMEERVVLHRNPKEEEEEDETVTVALHIGLPSPSAAEMATVLSSNSSEITDKEHGDGEDSGFMVNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCAKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASDVEQDNDSTQ* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02848 351 SUPERFAMILY beta-beta-alpha zinc fingers 256 294 IPR036236 -
Rops8g02848 351 Gene3D Classic Zinc Finger 252 328 - -
Rops8g02848 351 ProSitePatterns Zinc finger C2H2 type domain signature. 192 212 IPR013087 -
Rops8g02848 351 FunFam Zinc finger protein WIP2 243 325 - -
Rops8g02848 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 190 217 IPR013087 -
Rops8g02848 351 PANTHER ZINC FINGER PROTEIN WIP2 42 347 IPR043584 GO:0003700|GO:0010468
Rops8g02848 351 Gene3D Classic Zinc Finger 189 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02848 Rops-Chr8 64137393 64139773 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02848 1 348 C2H2 Transcription Factor Family AT3G57670 62.078 7.02e-150 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops8g02848 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02848 - - jre:108984376 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02848 8 64137393 64139773 Rops8g02848 8 64137393 64139773 ECH
Rops8g02848 8 64137393 64139773 Rops7g00830 7 11090278 11092401 ECH
Rops8g02848 8 64137393 64139773 Rops6g00618 6 16124768 16127128 PCT