Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02844 ATGGAGAAAGAAGAAGGTGGAGCTCTTCTCTTTCTTGGTGGCTCCTCATTTTCTTCTTATTTTCTCTTCAGATTTTCTCGGAATCCAAACACACTGACCTTCTTCTCTTTCTTTTTTCACCCGCCTGGCTTTAATGGGTTTGTGCTTTTTTCCACAGCAGCATCTCCTACAAATGAAAGTATGTGCTGTGAGTTGGAGCGGTTAAAGCCTGCACCGTCTCCATCGGAATCTCCTATTTTGATACCTACCTCTCAACCAAGAAACCACACGATGAATCGCTTTACCGTTGACACTGAAGATACTTTTGCCAGTCTGCTTGAACTTGCAGCCAATAATGATGTTGAAGGTTTCAAACGATTGATTGAGTGTGCTCCTTCCTCTGTAGATGAGGTTGGACTGTGGTATGGTCGTCGAAAGGGATCAAAGCAGATGGTCAATGAACAAAGAACACCTTTGATGGTTGCTGCTACCTATGGTAGCATTGATATTATGAAATTGATTCTTTCTCTATCTGATGCCGATATTAATCGGCCTTGTGGCTTCGACAAGAGCACTGCCCTTCACTGTGCTGCATCAGGTGGGGCTGAAAATGCGGTTGATGCTGTGAAACTGCTTCTAGCAGCAGAACTTCTTCAAACTGATGATTCTGTTCCTGGGCGTAATCTTAGGGTGATCACAACCTCATTCAATACATATTCTCCACCTTTATCAGCTTCACCTGAGAACGGGTCTCCTTCTGCACCAGATCTCCAGTTGAAGTTAAAGTCAAATGATGTTCCTGTTTCTTCTGCATCTGAGAAGAAAGAATATCTTGTTGATCCATCCCTTCCAGACATAAAGAACAGCATATACTCAACTGATGAATTCCGAATGTATTCTTTCAAGGTTCGACCTTGTTCACGAGCTTATTCACATGATTGGACAGAATGTCCTTTTGTTCATCCGGGGGAGAATGCTAGAAGAAGGGACCCAAGAAAGTACCATTACAGTTGTGTCCCTTGTCCTGATTTTCGGAAGGGTGCTTGCAGGCGAGGAGATATGTGTGAATATGCTCATGGGGTTTTCGAGTGCTGGCTGCATCCAGCACAATATCGAACTCGTCTCTGCAAGGATGGGACAAATTGCTCCCGAAGAGTTTGCTTCTTTGCCCACACTGCAGAAGAGCTTCGACCATTGTATGTTTCGACTGGTTCTGCTGTTCCCTCTCCTCGATCAAGCACATCTTCTGCCATGGATTTTGCTGCAGCCATGAGCATGTTGCCTGGCTCCCCTTCCTCCATGTCTGTCATGTCTCCTTCACCATTCACTCCACCCATGTCACCTTCTGCCAATGGCATTTCACATTCTTCTGTTGCTTGGCCCCAGCCGAACATCCCAGCTTTGCATCTTCCAGGAAGTAATATTCAGTCTAGTCGATTGAGATCTTCACTCAATGCTAGAGATATTCCTGCAGATGATTTTAACATGTTATCTGATTATGATCAACAGCTCCTTAATGAGCTATCATGCCTTTCTCCACAGCCTATGAATTCTAATACCCTAAACCGCCCTGGTCGTATGAAACCCTTGACTCCGTCAAATCTTGATGATCTCTTTTCTGCTGAGAGTTCTTCTCCTCGATATGCTGATCCAACACTGACTTCAACTGTTTTTTCTCCAACTCACAAATCAGCCGTCTTTAATCAGTTTCAGCAGCAGCAGCAAAGCTTGCTTTCACCTGTGAATACTAATTTTTCTTCTAAAAATGTTGAGCATCCTTTATTGCAGGCCTCTTTTGGGGTTCAGACATCAGGAAGAATGTCTCCACGAAATGTGGAACCTATCTCTCCAATGAGCTCTAGGATTTCTATGCTTGCTCAACGCGAGAATCAGCAACAATTTCGAAGCCTAAGCTTCAGGGAAGTTGGCTCCAACTCTGCTGCTGCAGCTGCTGCCTCGGCCAATTCTTGGTCAAAATGGGAATCCCCCAATGGTAAGTTGGATTGGGCAGTCAGTGCAGATGAATTAGGTAAGCACCGTCGATCGTCTTCATTTGAGCTTGGGAACAATGGTGAGGAGCCTGATTTATCATGGGTGCAGTCACTAGTTAAAGAATCTCCAACTGAGATTAAAGAGAAATTGGCAACTACTGGCTCAAGTGTTGCAGCAGTTGGACCCTCCAGTGAGGGGTCAAATATGAGCACACAAATGGAATCTGTTGATCATGCTGTATTGGGAGCATGGCTTGAACAGATGCAGCTTGATCATCTTGTGGCTCAGCAAAACTGA 2268 0.4471 MEKEEGGALLFLGGSSFSSYFLFRFSRNPNTLTFFSFFFHPPGFNGFVLFSTAASPTNESMCCELERLKPAPSPSESPILIPTSQPRNHTMNRFTVDTEDTFASLLELAANNDVEGFKRLIECAPSSVDEVGLWYGRRKGSKQMVNEQRTPLMVAATYGSIDIMKLILSLSDADINRPCGFDKSTALHCAASGGAENAVDAVKLLLAAELLQTDDSVPGRNLRVITTSFNTYSPPLSASPENGSPSAPDLQLKLKSNDVPVSSASEKKEYLVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSMLPGSPSSMSVMSPSPFTPPMSPSANGISHSSVAWPQPNIPALHLPGSNIQSSRLRSSLNARDIPADDFNMLSDYDQQLLNELSCLSPQPMNSNTLNRPGRMKPLTPSNLDDLFSAESSSPRYADPTLTSTVFSPTHKSAVFNQFQQQQQSLLSPVNTNFSSKNVEHPLLQASFGVQTSGRMSPRNVEPISPMSSRISMLAQRENQQQFRSLSFREVGSNSAAAAAASANSWSKWESPNGKLDWAVSADELGKHRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKLATTGSSVAAVGPSSEGSNMSTQMESVDHAVLGAWLEQMQLDHLVAQQN* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02844 755 SUPERFAMILY Ankyrin repeat 105 207 IPR036770 -
Rops8g02844 755 MobiDBLite consensus disorder prediction 504 520 - -
Rops8g02844 755 FunFam Zinc finger CCCH domain-containing protein 66 286 354 - -
Rops8g02844 755 MobiDBLite consensus disorder prediction 708 728 - -
Rops8g02844 755 Gene3D - 82 216 IPR036770 -
Rops8g02844 755 PANTHER UNKEMPT FAMILY MEMBER 107 699 IPR045234 -
Rops8g02844 755 Pfam Ankyrin repeats (3 copies) 108 209 IPR002110 GO:0005515
Rops8g02844 755 MobiDBLite consensus disorder prediction 504 524 - -
Rops8g02844 755 ProSiteProfiles Zinc finger C3H1-type profile. 333 355 IPR000571 GO:0046872
Rops8g02844 755 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 333 353 IPR000571 GO:0046872
Rops8g02844 755 Gene3D - 329 391 - -
Rops8g02844 755 SMART ANK_2a 182 214 IPR002110 GO:0005515
Rops8g02844 755 SMART ANK_2a 147 177 IPR002110 GO:0005515
Rops8g02844 755 SMART c3hfinal6 363 386 IPR000571 GO:0046872
Rops8g02844 755 SMART c3hfinal6 328 354 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02844 Rops-Chr8 64005493 64009257 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02844 99 748 C2H2 Transcription Factor Family AT5G12850 51.000 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops8g02844 Ank_2 1.5e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02844 - - ccaj:109796653 1156.35