Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02841 ATGGATACTTGCAAGAAGTCCCCCTTGAAGCCATGGAAGAAAGGGCCAACCAGAGGGAAAGGTGGCCCCCAGAATGCCTCGTGTGAGTATCGAGGCGTTCGGCAAAGAACATGGGGCAAATGGGTGGCTGAGATAAGAGAACCAAAGAAGAGAACCAGACTCTGGCTTGGTTCTTTTGCCACAGCTGAAGAAGCTGCCATGGCTTATGATGAAGCTGCAAGGAGACTCTATGGACCAGATGCATACCTTAATCTTCCCCACCTGCAACCCAACTCCAACTCACTTATCAAATCTGGAAAGTTCAAATGGTTGCCTTCCAAGAACTTCATTTCAATGTTTCCTTCTTGTGGATTACTCAATGTAAATGCTCAACCTAGTGTTCATTTAATCCATCAGAGGCTGCAAGAACTGAAGCAGAATGCAGTTGTAAGTCAACCCCCTTCTAGCTCATCCAATGATCCAAAGTCAGAGGTTCAGAATGTAGACAGCAAAGATCATGCAGAAGATCCTCCAAAAGAAAAAGATGTTCATATATCACAAGACAATATGCTTGGAGATCTTCAGGAGAAACCCCAGATAGACCTCCATGAGTTTCTTCAACAGCTGGGAGTACTGAAAGAAGAAAGACATTCAGAAAGAACCGATAGCTCAGGAAGTTCAACAGTGCATGAAGCTGTATTAAAAGATGACAATGATCAACTGGGAGTGTTTTCTGACAAGAGTGTTAACTGGGAGGCATTGATTGAGATGCATGGAATTGCAGGTATTCAGGAATCAGAAGCCACCCAGCTTGAAGCATATGACCCAAATGATGAGCTTACTTTCTCAACTTCCATTTGGAACTTTTAA 849 0.437 MDTCKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLQPNSNSLIKSGKFKWLPSKNFISMFPSCGLLNVNAQPSVHLIHQRLQELKQNAVVSQPPSSSSNDPKSEVQNVDSKDHAEDPPKEKDVHISQDNMLGDLQEKPQIDLHEFLQQLGVLKEERHSERTDSSGSSTVHEAVLKDDNDQLGVFSDKSVNWEALIEMHGIAGIQESEATQLEAYDPNDELTFSTSIWNF* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02841 282 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Rops8g02841 282 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Rops8g02841 282 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Rops8g02841 282 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Rops8g02841 282 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Rops8g02841 282 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 246 - -
Rops8g02841 282 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Rops8g02841 282 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Rops8g02841 282 MobiDBLite consensus disorder prediction 140 176 - -
Rops8g02841 282 MobiDBLite consensus disorder prediction 1 28 - -
Rops8g02841 282 MobiDBLite consensus disorder prediction 140 157 - -
Rops8g02841 282 MobiDBLite consensus disorder prediction 207 226 - -
Rops8g02841 282 MobiDBLite consensus disorder prediction 158 176 - -
Rops8g02841 282 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Rops8g02841 282 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02841 Rops-Chr8 63930090 63930938 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02841 5 282 AP2-EREBP Transcription Factor Family AT3G57600 54.610 9.70e-92 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops8g02841 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02841 - - gmx:100801311 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02841 8 63930090 63930938 Rops8g02841 8 63930090 63930938 ECH