Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02829 ATGGGTAACTGTTGTGGAACCCCTGCTGTTTCCGGCGAGGAAGCAAATAAGAAGAACAACAAAAAGGGAAAGAAGGAAAACCCTTTCGCCAACGACTACGGCGTTAACAATAGCGGGTCGAAACTCACCGTTTTGAAGGACCCAACGGGTCGTGAGATCGAGGTTCATTACGAACTGGGTCGTGAACTCGGTAGGGGTGAGTTTGGGATAACGTATCTTTGCACCGATAAGGAAACAGGAGAGGAACTTGCTTGCAAGTCGATTTCGAAGAAGAAGCTTAGAACGGCGATTGATATTGAAGATGTGAGAAGAGAGGTTGAGATCATGAGACACTTGCCGAAACACCCGAATATTGTGACGTTGAAGGATACCTATGAGGATGACAATGCTGTTCACCTTGTTATGGAGCTTTGTGAGGGTGGAGAACTCTTCGATCGCATCGTTGCACGTGGTCACTACACCGAACGTGCAGCCGCTGCTGTTACAAAAACCATCGTTGAAGTTGTTCAGATGTGCCACAAGCATGGTGTGATGCACAGGGATCTCAAGCCTGAGAACTTTTTGTTTGCAAATAAGAAGGAAACAGCAGCTCTGAAAGCTATAGATTTTGGATTGTCAGTGTTCTTTAAACCAGGGGAAAGATTTAATGAGATAGTTGGAAGTCCATACTACATGGCTCCTGAGGTATTAAAGCGAAATTATGGCCCAGAAGTAGATATCTGGAGTGCTGGAGTAATTCTATACATCTTACTCTGTGGTGTCCCACCATTTTGGGCAGAAACTGAACAAGGAGTTGCACAAGCTATTATACGATCTCATGTTGAATTCAAAAGGGATCCATGGCCAAAGGTTTCTGATAATGCAAAAGACCTCGTGAAGAAGATGCTAGATCCTGACCCAAGACGGCGGCTAAGTGCACAGGAAGTGTTAGATCATCCATGGATACAAAATGCAAAGAAAGCTCCTAATGTTTCTTTAGGAGAAACAGTTAAAGCAAGGCTCAAGCAATTTTCTGTAATGAACAAGCTTAAGAAAAGAGCTCTGAGGGTGATTGCAGAGCATTTGTCAGTAGAAGAAGCTGCTGGACTAAGAGAGGGATTCCGGCTTATGGATACAGGCAACAAAGGCAAGATTAACATTGATGAACTACGAGTAGGGTTGCATAAACTAGGCCATCAAATTCCTGACGCAGATCTCCAAATTCTTATGGAAGCTGGTGATGTAGACAGGGATGGGCACCTAAATTATGGAGAGTTTGTTGCCATTTCTGTTCACCTGAGAAAGATGGGAAATGACGACGAGCACCTTCGCAAAGCCTTCCAATTTTTTGATCAAAACCAAAGCGGGTATATTGAGATTGAGGAGCTGCGTAGTGCCTTATCTGATGAGGTTGACACAAACAGTGAAGAAGTCATCAATGCAATTATGCTCGATGTGGATACAGATAAGGATGGAAGGATAAGTTATGATGAATTTGCCACAATGATGAAGGCTGGCACAGATTGGAGAAAAGCATCAAGGCAGTATTCAAGAGAGAGGTTCACAAGTCTCAGCCTGACATTGATGAGGGATGGATCATTGCAATTGCCCAATGAAAAACAATGA 1605 0.4374 MGNCCGTPAVSGEEANKKNNKKGKKENPFANDYGVNNSGSKLTVLKDPTGREIEVHYELGRELGRGEFGITYLCTDKETGEELACKSISKKKLRTAIDIEDVRREVEIMRHLPKHPNIVTLKDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTKTIVEVVQMCHKHGVMHRDLKPENFLFANKKETAALKAIDFGLSVFFKPGERFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSHVEFKRDPWPKVSDNAKDLVKKMLDPDPRRRLSAQEVLDHPWIQNAKKAPNVSLGETVKARLKQFSVMNKLKKRALRVIAEHLSVEEAAGLREGFRLMDTGNKGKINIDELRVGLHKLGHQIPDADLQILMEAGDVDRDGHLNYGEFVAISVHLRKMGNDDEHLRKAFQFFDQNQSGYIEIEELRSALSDEVDTNSEEVINAIMLDVDTDKDGRISYDEFATMMKAGTDWRKASRQYSRERFTSLSLTLMRDGSLQLPNEKQ* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02829 534 FunFam Calcium-dependent protein kinase 7 324 500 - -
Rops8g02829 534 ProSitePatterns EF-hand calcium-binding domain. 480 492 IPR018247 -
Rops8g02829 534 Pfam EF-hand domain pair 434 497 IPR002048 GO:0005509
Rops8g02829 534 ProSiteProfiles EF-hand calcium-binding domain profile. 431 466 IPR002048 GO:0005509
Rops8g02829 534 SMART serkin_6 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02829 534 ProSitePatterns Protein kinases ATP-binding region signature. 63 86 IPR017441 GO:0005524
Rops8g02829 534 CDD EFh 435 497 IPR002048 GO:0005509
Rops8g02829 534 SMART efh_1 435 463 IPR002048 GO:0005509
Rops8g02829 534 SMART efh_1 398 426 IPR002048 GO:0005509
Rops8g02829 534 SMART efh_1 471 499 IPR002048 GO:0005509
Rops8g02829 534 SMART efh_1 362 390 IPR002048 GO:0005509
Rops8g02829 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Rops8g02829 534 ProSiteProfiles EF-hand calcium-binding domain profile. 467 502 IPR002048 GO:0005509
Rops8g02829 534 CDD STKc_CAMK 56 314 - -
Rops8g02829 534 Gene3D - 324 499 - -
Rops8g02829 534 MobiDBLite consensus disorder prediction 1 31 - -
Rops8g02829 534 Gene3D Phosphorylase Kinase; domain 1 59 142 - -
Rops8g02829 534 FunFam calcium-dependent protein kinase 13 143 323 - -
Rops8g02829 534 Gene3D Transferase(Phosphotransferase) domain 1 143 323 - -
Rops8g02829 534 SUPERFAMILY Protein kinase-like (PK-like) 56 323 IPR011009 -
Rops8g02829 534 ProSitePatterns EF-hand calcium-binding domain. 444 456 IPR018247 -
Rops8g02829 534 ProSitePatterns EF-hand calcium-binding domain. 407 419 IPR018247 -
Rops8g02829 534 Pfam Protein kinase domain 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02829 534 ProSiteProfiles EF-hand calcium-binding domain profile. 358 393 IPR002048 GO:0005509
Rops8g02829 534 FunFam Calcium-dependent protein kinase 1 59 142 - -
Rops8g02829 534 Pfam EF-hand domain pair 375 424 IPR002048 GO:0005509
Rops8g02829 534 SUPERFAMILY EF-hand 344 522 IPR011992 -
Rops8g02829 534 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g02829 534 PANTHER SERINE/THREONINE-PROTEIN KINASE 19 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02829 Rops-Chr8 63722942 63727712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02829 1 532 EF-hand Containing Proteins AT5G19450 80.410 0.0 895
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Rops8g02829 Pkinase 7.2e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02829 K13412 - gmx:100790745 958.362