Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02825 ATGGGAACTCCGGAATTTCCAGATCTAGGCAAGCATTGTTCTGTTGCTGATTGCAAGCTCATTGACTTCTTGCCCTTCACTTGTGATCGCTGTAATCAGGTATATTGTTTGGAGCATCGAAGTTATATTAAGCATCAGTGTACAAAAGCCAACAAACTAGATGTCACTGTTGTTGTATGTCCACTTTGTGCCAAAGGAGTTCGCCTAATTCCAGATCAAGATCCAAACATAACTTGGGAGAATCATGTTAACACCGATTGTGACCCATCAAATTATGAGAAAGTCACAAAGAAGAGAAAATGCCCAGCCCCCGGATGCAAAGAGATATTGGTATTCTCAAACACAATCAAGTGCCGGGACTGCTTGGTAGACCATTGTTTGAAGCACCGGTTTGGACCTGATCACAAATGCTCTGGTCCCAAAAAGTTGGAAACAAGTTTTTCATTCATGAGTCTTTTGAATGGGAGTAGTAGAAAAGAGGAGTCAAAACCCAATTTAGCTTCAACCACATCATCTAAATGGACCACAAGCTTTCTTAACTTGGCTTCTAATATTCGAGCTTCTGCTGAAGCGGGTATGTCAAAATTGAGTGGTGAAATTAACCAAGCCTGGCAGACAGCAAGGGATGGGGTGGGACAGAGCTGTAGCAGTGAAAATGGAAATGGAAATGGAAATTATCAAGTGGAGCAATGCCCTCGGTGTGGTGCAAAGTTTTCCTCAGTCACTACTTTGGTGGATCATGTACAAAAAGTTCATGAAAGGAGTGACAACCAATCTGGGGTAAAGAAGATGACGATTGATGCATGCCCCAAGTGTAGTAAAGGATTTCTAGACCCGGTTTCCCTTGTGGAGCATGTTGAGAGGGATCATGCTGGTAGTTCTAGAGCATAG 891 0.4287 MGTPEFPDLGKHCSVADCKLIDFLPFTCDRCNQVYCLEHRSYIKHQCTKANKLDVTVVVCPLCAKGVRLIPDQDPNITWENHVNTDCDPSNYEKVTKKRKCPAPGCKEILVFSNTIKCRDCLVDHCLKHRFGPDHKCSGPKKLETSFSFMSLLNGSSRKEESKPNLASTTSSKWTTSFLNLASNIRASAEAGMSKLSGEINQAWQTARDGVGQSCSSENGNGNGNYQVEQCPRCGAKFSSVTTLVDHVQKVHERSDNQSGVKKMTIDACPKCSKGFLDPVSLVEHVERDHAGSSRA* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02825 296 Gene3D - 2 54 IPR035896 -
Rops8g02825 296 Gene3D - 86 165 IPR035896 -
Rops8g02825 296 FunFam AN1-type zinc finger protein 2B isoform X1 3 64 - -
Rops8g02825 296 Gene3D Classic Zinc Finger 198 295 - -
Rops8g02825 296 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Rops8g02825 296 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Rops8g02825 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 267 295 IPR013087 -
Rops8g02825 296 SUPERFAMILY AN1-like Zinc finger 56 143 IPR035896 -
Rops8g02825 296 ProSitePatterns Zinc finger C2H2 type domain signature. 269 290 IPR013087 -
Rops8g02825 296 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 263 - -
Rops8g02825 296 SMART c2h2final6 229 252 IPR013087 -
Rops8g02825 296 SMART c2h2final6 267 290 IPR013087 -
Rops8g02825 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 257 IPR013087 -
Rops8g02825 296 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Rops8g02825 296 ProSitePatterns Zinc finger C2H2 type domain signature. 231 252 IPR013087 -
Rops8g02825 296 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Rops8g02825 296 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Rops8g02825 296 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Rops8g02825 296 SUPERFAMILY AN1-like Zinc finger 6 52 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02825 Rops-Chr8 63638342 63640522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02825 1 296 C2H2 Transcription Factor Family AT2G41835 61.873 2.27e-123 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops8g02825 zf-AN1 1.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02825 - - gmx:100806459 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02825 8 63638342 63640522 Rops8g02825 8 63638342 63640522 ECH
Rops8g02825 8 63638342 63640522 Rops6g00592 6 15492230 15500382 PCT