Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02816 ATGAAACGTTATCTTCAACCTGAAATGGGTGACCACTGTAATTCACATACTCCATTAGATATTAATTCTAATGGGTGTGAGGGAAACTTGACATCTCATTCTCTAGTAAAATGTAAGCGTGAAATCCTTGATTTTAGTGAAAATGATGATTTTTCTGTTCCACAGGCTGGGATGGTATTTAATTCAGAGAATGAGGTGAAATCGTATTACAGAAAATATGCCAACCAATCAGGCTTCCGCTTCAGAACTAGAAGCTCAAGAAAGGGACATGATGGCAGAGTTAAGTATTTAATACTTTCATGTTCTGGAAAAGGAGGTAGAAGGGGCAAGAAAGGAATAAGAAATACTTCTACTGCATCAATGGAACAGAATTGTGAAGCCAAGATCACTGTGACTTCGTGTAAAGATGGAGCCTACCAAATTTGCAAAGTTGCACTCATTCACAATCATGAATTGAGTCCACGTCTACTCATAAAGGATATTGACACGCATGGTCAAAGGACATCAGATCAAAAAGATGTTGACATGGTTGTTAAGAGGACATCAAACCAAAATGATTGTGGAAACAACCTTCAGAAAGGAAGACATTTGGTTGGGGAAGATGGAGATGGTAGAGCCCTTCAGCAGTATTTGGCGAGGATGCAGAAACAAGATAGCAACTTCTTCTATGCGATTGACTTGGATGATTTCTTCAATGTGACGAGTGTTTTTTGGGCTGATGGAAGGAGTAGAGCTGCATATGAATCATTTGGTGACGTGGTGACTGTTGATACTACATATCTCTTTAATCAATACAAAGTGCCACTTGTAACTTTTGTTGGAGTGAACCATCATGGGCAATCTGTACTTTTTGGTTGTGGGTTGTTGTCATGTGAAGACTCGGAGTCATTTGTTTGGCTATTTCAATCGTTGCTACGTTGCATGTCTGGTGTACCCCCTCAAGGAGTCATAATAGATCATTGCAAGGCCATGCAGAAGGCAATTGAAACTGTATTCCCCTCCACTCGACATTGTTGGTGTTTGTCACATATAATGAAAAAACTTCCCCAAAAAATACATGGATATGCTAAGTATGAGTCCATAAGAGACCATTTGCAGCATATTGTATATGATACACTCACTACAAATGAATTCGAGAGGAATTGGAAGAAGATTGTGGAGGATTTTGGCCTTGAGGATAATGAATGGTTGAAGGAGTTGTTCCTTGAGCGACATCACTGGGTTCCTGCATTTGTAAGAGGTGATTTTTGGGCTGGAATGTCTGTTAAACTATGCGGTGAAAGCATGCATGCATTTTTTGATGGATTTGTTAACCAGCAAACAACTTTGAAGCAATTTGTTGATCAGTATGATAATGCTTTGCAATTCAGTGCAGAGAAGGAGTATTTAGCTGACATACATTCATCTTGTAGCACTCAGGCTTGTGCTAAATCTCCAATGGAGCAGCAGTTTAAACTTACATACACTAATGCTAAATTTATGGAGGTTCAAGATGAGTTTGTTGGAAAGGCTAACTGTAACGTTTCTATTGCCCGTGTTGATGGTTTTATTTGTCACTATAATGTCATTGAGGATGTGATAATGGGGGATAAGCCTAAGAAATCCGTGGTTGTAGTCACCTATAACAGGGTAAATTGTGATGTAAGGTGCAATTGCTGCTTGTTTGAGTACAGAGGAATACTCTGCAGGCACTCACTTGCCATACTATCACAAGAGCAAGTGAAGGAGGTACCCTGTAAATATATTTTGGATAGGTGGAGGAAAAATATAAACAGGAAGTATGTTTATGTCAAAACTAGCTACGGTGTTCAGCATTTTAAACCTCATATGCAAAGGCTTGAATTGTTGTGCAATGAATTCAGTAGTGTTGCTGATGCTGCTGCTGAATTTGAGGAAACAAGAGCTAATGAGCAACCTGGACCGTATTGCCAATCTCTACTCAGAACCGTCTCTCTACTAGCTGGTTTTCATCTTCATCTTGGATTCCCTGTTAGGACTTGA 2001 0.3948 MKRYLQPEMGDHCNSHTPLDINSNGCEGNLTSHSLVKCKREILDFSENDDFSVPQAGMVFNSENEVKSYYRKYANQSGFRFRTRSSRKGHDGRVKYLILSCSGKGGRRGKKGIRNTSTASMEQNCEAKITVTSCKDGAYQICKVALIHNHELSPRLLIKDIDTHGQRTSDQKDVDMVVKRTSNQNDCGNNLQKGRHLVGEDGDGRALQQYLARMQKQDSNFFYAIDLDDFFNVTSVFWADGRSRAAYESFGDVVTVDTTYLFNQYKVPLVTFVGVNHHGQSVLFGCGLLSCEDSESFVWLFQSLLRCMSGVPPQGVIIDHCKAMQKAIETVFPSTRHCWCLSHIMKKLPQKIHGYAKYESIRDHLQHIVYDTLTTNEFERNWKKIVEDFGLEDNEWLKELFLERHHWVPAFVRGDFWAGMSVKLCGESMHAFFDGFVNQQTTLKQFVDQYDNALQFSAEKEYLADIHSSCSTQACAKSPMEQQFKLTYTNAKFMEVQDEFVGKANCNVSIARVDGFICHYNVIEDVIMGDKPKKSVVVVTYNRVNCDVRCNCCLFEYRGILCRHSLAILSQEQVKEVPCKYILDRWRKNINRKYVYVKTSYGVQHFKPHMQRLELLCNEFSSVADAAAEFEETRANEQPGPYCQSLLRTVSLLAGFHLHLGFPVRT* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02816 666 SMART 26again6 548 575 IPR006564 GO:0008270
Rops8g02816 666 ProSiteProfiles Zinc finger SWIM-type profile. 535 573 IPR007527 GO:0008270
Rops8g02816 666 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 47 632 IPR031052 GO:0006355
Rops8g02816 666 Pfam FAR1 DNA-binding domain 68 153 IPR004330 -
Rops8g02816 666 Pfam SWIM zinc finger 546 570 IPR007527 GO:0008270
Rops8g02816 666 Pfam MULE transposase domain 253 347 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02816 Rops-Chr8 63478369 63481178 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Rops8g02816 MULE 5.4e-32 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02816 - K17604 gmx:102660547 873.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02816 8 63478369 63481178 Rops8g02816 8 63478369 63481178 ECH