Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g02811 ATGAAGGACGAAGAGTTGGACGACATGATGAACAACGTCTCCCATATTTTCTGTTGGGACCTCCTCATCGGTGAGCGTTATGGCATCAAAGCTGTCGTCAGAGCCGAACGCATCGACGAGGAAGACATGAAACGCAGTAACCTTATCTCCACTGACACCACCATCAACGCACTCGATGCCCTCTTTCAAGGTCGGGGGGAAAGTTTACGATATTTGAGTGAAGGTGGAGGGACCCAAATCTCTAAGCATCATAGGATTGTGTACCACATAATTAAATTAGATGCAGAGGAAGCTTCCACCAGGCAAAGCACACGTGGTAATAGGGACTACCAGGTTCTGAACACAACACTTTCTTGTACAGAAGTACTATACTCTAAAGTATTCAACTCAAGCTCCTCTCAGCCGTCTGTGTCGGTTCCTCTGGAAAGTGAAACTTTTTGGCTAGTTGTATGA 453 0.4614 MKDEELDDMMNNVSHIFCWDLLIGERYGIKAVVRAERIDEEDMKRSNLISTDTTINALDALFQGRGESLRYLSEGGGTQISKHHRIVYHIIKLDAEEASTRQSTRGNRDYQVLNTTLSCTEVLYSKVFNSSSSQPSVSVPLESETFWLVV* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g02811 150 PANTHER PROTEIN LEAFY 1 64 IPR002910 GO:0003677|GO:0006355
Rops8g02811 150 Pfam Floricaula / Leafy protein SAM domain 1 39 IPR035079 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g02811 Rops-Chr8 63360346 63361499 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g02811 1 33 Orphan Transcription Factor Family AT5G61850 75.758 9.23e-12 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Rops8g02811 SAM_LFY 2.3e-17 CL0003
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g02811 - - gmx:100799720 92.8189